Application Groups |
Group | Description |
---|---|
Acd | Acd file utilities |
Alignment | Sequence comparison and alignment |
Alignment consensus | Merging sequences to make a consensus |
Alignment differences | Finding differences between sequences |
Alignment dot plots | Dot plot sequence comparisons |
Alignment global | Global sequence alignment |
Alignment local | Local sequence alignment |
Alignment multiple | Multiple sequence alignment |
Assembly fragment assembly | DNA sequence assembly |
Data resources | Data resources |
Data retrieval | Data retrieval |
Data retrieval chemistry data | Chemistry data retrieval |
Data retrieval feature data | Sequence feature data retrieval |
Data retrieval ontology data | Ontology data retrieval |
Data retrieval resource data | Resource data retrieval |
Data retrieval sequence data | Sequence data retrieval |
Data retrieval text data | Text data retrieval |
Data retrieval tool data | Tool data retrieval |
Data retrieval url data | Url data retrieval |
Display | Publication-quality display |
Documentation | Documentation |
Edit | Sequence editing |
Enzyme kinetics | Enzyme kinetics calculations |
Feature tables | Manipulation and display of sequence annotation |
HMM | Hidden markov model analysis |
Menus | Menu interface(s) |
Nucleic 2d structure | Nucleic acid secondary structure |
Nucleic codon usage | Codon usage analysis |
Nucleic composition | Composition of nucleotide sequences |
Nucleic CpG islands | CpG island detection and analysis |
Nucleic functional sites | Nucleic acid functional sites |
Nucleic gene finding | Predictions of genes and other genomic features |
Nucleic motifs | Nucleic acid motif searches |
Nucleic mutation | Nucleic acid sequence mutation |
Nucleic primers | Primer prediction |
Nucleic profiles | Nucleic acid profile generation and searching |
Nucleic properties | Nucleic acid physicochemical properties |
Nucleic repeats | Nucleic acid repeat detection |
Nucleic restriction | Restriction enzyme sites in nucleotide sequences |
Nucleic RNA folding | RNA folding methods and analysis |
Nucleic transcription | Transcription factors, promoters and terminator prediction |
Nucleic translation | Translation of nucleotide sequence to protein sequence |
Ontology | Ontologies |
Ontology edam | Edam ontology |
Ontology go | Go gene ontology |
Ontology taxonomy | Ncbi taxonomy |
Phylogeny consensus | Phylogenetic consensus methods |
Phylogeny continuous characters | Phylogenetic continuous character methods |
Phylogeny discrete characters | Phylogenetic discrete character methods |
Phylogeny distance matrix | Phylogenetic distance matrix methods |
Phylogeny gene frequencies | Phylogenetic gene frequency methods |
Phylogeny molecular sequence | Phylogenetic molecular sequence methods |
Phylogeny tree drawing | Phylogenetic tree drawing methods |
Protein 2d structure | Protein secondary structure |
Protein 3d structure | Protein tertiary structure |
Protein composition | Composition of protein sequences |
Protein domains | Protein domain analysis |
Protein functional sites | Protein functional sites |
Protein modifications | Protein post-translational modifications |
Protein motifs | Protein motif searches |
Protein mutation | Protein sequence mutation |
Protein profiles | Protein profile generation and searching |
Protein properties | Protein physicochemical properties |
Test | Testing tools, not for general use. |
Utils | Utility tools |
Utils database creation | Database installation |
Utils database indexing | Database indexing |