UTILS DATABASE CREATION |
Database installation
Program name | Description |
---|---|
aaindexextract | Extract amino acid property data from AAINDEX |
cutgextract | Extract codon usage tables from CUTG database |
jaspextract | Extract data from JASPAR |
printsextract | Extract data from PRINTS database for use by pscan |
prosextract | Processes the PROSITE motif database for use by patmatmotifs |
rebaseextract | Process the REBASE database for use by restriction enzyme applications |
tfextract | Process TRANSFAC transcription factor database for use by tfscan |
cathparse | Generates DCF file from raw CATH files |
domainnr | Removes redundant domains from a DCF file |
domainseqs | Adds sequence records to a DCF file |
domainsse | Add secondary structure records to a DCF file |
scopparse | Generate DCF file from raw SCOP files |
ssematch | Search a DCF file for secondary structure matches |
allversusall | Sequence similarity data from all-versus-all comparison |
seqnr | Removes redundancy from DHF files |
domainer | Generates domain CCF files from protein CCF files |
hetparse | Converts heterogen group dictionary to EMBL-like format |
pdbparse | Parses PDB files and writes protein CCF files |
pdbplus | Add accessibility and secondary structure to a CCF file |
pdbtosp | Convert swissprot:PDB codes file to EMBL-like format |
sites | Generate residue-ligand CON files from CCF files |