NUCLEIC GENE FINDING |
Predictions of genes and other genomic features
Program name | Description |
---|---|
checktrans | Reports STOP codons and ORF statistics of a protein |
getorf | Finds and extracts open reading frames (ORFs) |
marscan | Finds matrix/scaffold recognition (MRS) signatures in DNA sequences |
plotorf | Plot potential open reading frames in a nucleotide sequence |
showorf | Display a nucleotide sequence and translation in pretty format |
sixpack | Display a DNA sequence with 6-frame translation and ORFs |
syco | Draw synonymous codon usage statistic plot for a nucleotide sequence |
tcode | Identify protein-coding regions using Fickett TESTCODE statistic |
wobble | Plot third base position variability in a nucleotide sequence |