PROTEIN PROFILES |
Protein profile generation and searching
Program name | Description |
---|---|
profit | Scan one or more sequences with a simple frequency matrix |
prophecy | Create frequency matrix or profile from a multiple alignment |
prophet | Scan one or more sequences with a Gribskov or Henikoff profile |
seqsearch | Generate PSI-BLAST hits (DHF file) from a DAF file |
siggen | Generates a sparse protein signature from an alignment |
siggenlig | Generates ligand-binding signatures from a CON file |
sigscan | Generates hits (DHF file) from a signature search |
sigscanlig | Searches ligand-signature library and writes hits (LHF file) |