ALIGNMENT LOCAL |
Local sequence alignment
Program name | Description |
---|---|
matcher | Waterman-Eggert local alignment of two sequences |
seqmatchall | All-against-all word comparison of a sequence set |
supermatcher | Calculate approximate local pair-wise alignments of larger sequences |
water | Smith-Waterman local alignment of sequences |
wordfinder | Match large sequences against one or more other sequences |
wordmatch | Finds regions of identity (exact matches) of two sequences |
domainalign | Generate alignments (DAF file) for nodes in a DCF file |
domainrep | Reorder DCF file to identify representative structures |
seqalign | Extend alignments (DAF file) with sequences (DHF file) |
oalistat | Statistics for multiple alignment files |