The NUCLEUS Library Documentation: CVS (developers) release
Notes
This documentation is automatically derived from the comments in the source file function headers.
The functions are documented in the order in which they appear in the source files.
This documentation and the source code are also indexed in SRS as databases EFUNCREL and EDATAREL.
The pages are generated by a Perl script which is easily modifiable.
The most useful libraries for new developers are given in bold italics.
Notes
- This table is automatically generated.
- "Notes" link to library file-specific documentation (bottom of this page). This documentation will be added as part of the general AJAX make-over.
| LIBRARY | DATATYPES | FUNCTIONS | NOTES |
|---|---|---|---|
| Include file for all applications | Datatypes | Notes | |
| Alignments | Functions | Notes | |
| Comments | Functions | Notes | |
| Consensus sequences | Functions | Notes | |
| Data file utilities | Functions | Notes | |
| Database indexing using EMBL-CD indices | Datatypes | Functions | Notes |
| Domainatrix package algorithms | Datatypes | Functions | Notes |
| Domain algorithms | Functions | Notes | |
| EST algorithms | Datatypes | Functions | Notes |
| Exit calls for applications | Functions | Notes | |
| Groups of applications | Datatypes | Functions | Notes |
| Isoelectric point utilities | Functions | Notes | |
| Indexing databases using B+ trees | Datatypes | Functions | Notes |
| Initialising internals | Functions | Notes | |
| Comparison matrices | Datatypes | Functions | Notes |
| Miscellaneous methods | Functions | Notes | |
| Molecular fragment algorithms | Datatypes | Functions | Notes |
| N-mer (word) algorithms | Functions | Notes | |
| Pattern matching algorithms | Datatypes | Functions | Notes |
| Pattern list file reading | Functions | Notes | |
| Protein databank (PDB) structure file utilities | Functions | Notes | |
| Properties of protein sequences | Functions | Notes | |
| Reading data files | Functions | Notes | |
| Showing sequences in pretty formats | Datatypes | Functions | Notes |
| Signatures of protein domains | Datatypes | Functions | Notes |
| Word matching algorithms | Datatypes | Functions | Notes |
| XYZ 3D coordinate algorithms | Functions | Notes |