embpatlist.c

Function embPatlistSeqSearch

The main search function of patterns. It compiles the patterns and searches with them. If the pattern fails to compile, it is removed from list.

Prototype

void embPatlistSeqSearch (
      AjPFeattable ftable,
      const AjPSeq seq,
      AjPPatlistSeq plist,
      AjBool reverse
);

Type Name Read/Write Description

AjPFeattable ftable Output Table of found features

const AjPSeq seq Input Sequence to search

AjPPatlistSeq plist Modify List of patterns to search with

AjBool reverse Input Search reverse sequence as well

void RETURN

Type	Name	Read/Write	Description
`AjPFeattable`	`ftable`	Output	Table of found features
`const AjPSeq`	`seq`	Input	Sequence to search
`AjPPatlistSeq`	`plist`	Modify	List of patterns to search with
`AjBool`	`reverse`	Input	Search reverse sequence as well
`void`		RETURN

From EMBOSS 4.0.0

Function embPatlistRegexSearch

The main search function of patterns. It compiles the patterns and searches with them. If the pattern fails to compile, it is removed from list.

Prototype

void embPatlistRegexSearch (
      AjPFeattable ftable,
      const AjPSeq seq,
      AjPPatlistRegex plist,
      AjBool reverse
);

Type Name Read/Write Description

AjPFeattable ftable Output Table of found features

const AjPSeq seq Input Sequence to search

AjPPatlistRegex plist Modify List of patterns to search with

AjBool reverse Input Search reverse sequence as well

void RETURN

Type	Name	Read/Write	Description
`AjPFeattable`	`ftable`	Output	Table of found features
`const AjPSeq`	`seq`	Input	Sequence to search
`AjPPatlistRegex`	`plist`	Modify	List of patterns to search with
`AjBool`	`reverse`	Input	Search reverse sequence as well
`void`		RETURN

From EMBOSS 4.0.0

Function embPatternRegexSearch

The search function for a single regular expression pattern.

Prototype

void embPatternRegexSearch (
      AjPFeattable ftable,
      const AjPSeq seq,
      const AjPPatternRegex pat,
      AjBool reverse
);

Type Name Read/Write Description

AjPFeattable ftable Output Table of found features

const AjPSeq seq Input Sequence to search

const AjPPatternRegex pat Input Pattern to search with

AjBool reverse Input Sequence has been reversed

void RETURN

Type	Name	Read/Write	Description
`AjPFeattable`	`ftable`	Output	Table of found features
`const AjPSeq`	`seq`	Input	Sequence to search
`const AjPPatternRegex`	`pat`	Input	Pattern to search with
`AjBool`	`reverse`	Input	Sequence has been reversed
`void`		RETURN

From EMBOSS 4.0.0

Function embPatternSeqSearch

The search function for a single sequence pattern.

Prototype

void embPatternSeqSearch (
      AjPFeattable ftable,
      const AjPSeq seq,
      const AjPPatternSeq pat,
      AjBool reverse
);

Type Name Read/Write Description

AjPFeattable ftable Output Table of found features

const AjPSeq seq Input Sequence to search

const AjPPatternSeq pat Input Pattern to search with

AjBool reverse Input Search reverse sequence as well

void RETURN

Type	Name	Read/Write	Description
`AjPFeattable`	`ftable`	Output	Table of found features
`const AjPSeq`	`seq`	Input	Sequence to search
`const AjPPatternSeq`	`pat`	Input	Pattern to search with
`AjBool`	`reverse`	Input	Search reverse sequence as well
`void`		RETURN

From EMBOSS 4.0.0

Function embPatternSeqCompile

Adds compiled pattern into AjPPattern.

Prototype

AjBool embPatternSeqCompile (
      AjPPatternSeq pat
);

Type Name Read/Write Description

AjPPatternSeq pat Output Pattern for compiling

AjBool RETURN True, if compilation succeeded

Type	Name	Read/Write	Description
`AjPPatternSeq`	`pat`	Output	Pattern for compiling
`AjBool`		RETURN	True, if compilation succeeded

From EMBOSS 4.0.0

Function embPatlistExit

Cleanup pattern list indexing internals on exit

Prototype

void embPatlistExit (
      void
);

Type Name Read/Write Description

void RETURN

Type	Name	Read/Write	Description
`void`		RETURN

From EMBOSS 6.1.0