embcons.c

Function embConsCalc

Prototype

void embConsCalc (
      const AjPSeqset seqset,
      const AjPMatrix cmpmatrix,
      ajint nseqs,
      ajint mlen,
      float fplural,
      float setcase,
      ajint identity,
      AjBool gaps,
      AjPStr* cons
);

Type	Name	Read/Write	Description
const AjPSeqset	seqset	Input	multiple alignment
const AjPMatrix	cmpmatrix	Input	comparison scoring matrix
ajint	nseqs	Input	number of sequences in alignment
ajint	mlen	Input	length of alignment
float	fplural	Input	no. of +ve scoring matches below which there is no consensus
float	setcase	Input	case set if score above/below +ve matching threshold
ajint	identity	Input	number of identical symbols required for consesnsus
AjBool	gaps	Input	Allow gap characters in the consensus
AjPStr*	cons	Output	the created consensus sequence
void		RETURN

From EMBOSS 1.13.0