embcom.c


Function embComComplexity

Complexity calculation

Prototype

void embComComplexity (
      const char* seq,
      const char* name,
      ajint len,
      ajint jmin,
      ajint jmax,
      ajint l,
      ajint step,
      ajint sim,
      ajint freq,
      ajint omnia,
      AjPFile fp,
      AjPFile pf,
      ajint print,
      float* MedValue
);

TypeNameRead/WriteDescription
const char*seqInputSequence
const char*nameInputSequence name
ajintlenInputSequence length
ajintjminInputMinimum
ajintjmaxInputMaximum
ajintlInputWindow length
ajintstepInputStep size
ajintsimInputSimulation count
ajintfreqInputFrequency calculation (boolean)
ajintomniaInputAll sequences (boolean)
AjPFilefpModifyOutput file
AjPFilepfModifyTemp file
ajintprintInputPrint (boolean)
float*MedValueOutputResults
void RETURN

From EMBOSS 1.0.0


Function embComWriteFile

Write output file for complexity calculation

Prototype

void embComWriteFile (
      AjPFile fp,
      ajint jmin,
      ajint jmax,
      ajint lwin,
      ajint step,
      ajint sim
);

TypeNameRead/WriteDescription
AjPFilefpModifyOutput file
ajintjminInputMinimum
ajintjmaxInputMaximum
ajintlwinInputWindow
ajintstepInputStep size
ajintsimInputSimulation count
void RETURN

From EMBOSS 1.0.0


Function embComWriteValueOfSeq

Output sequence values for complexity calculation

Prototype

void embComWriteValueOfSeq (
      AjPFile fp,
      ajint n,
      const char* name,
      ajint len,
      float MedValue
);

TypeNameRead/WriteDescription
AjPFilefpModifyOutput file
ajintnInputSequence number
const char*nameInputSequence name
ajintlenInputSequece length
floatMedValueInputMean value
void RETURN

From EMBOSS 1.0.0


Function embComUnused

Unused functions in embcom to avoid compiler warnings

Prototype

void embComUnused (
      void
);

TypeNameRead/WriteDescription
void RETURN

From EMBOSS 1.0.0