The NUCLEUS Library Documentation: CVS (developers) release
Notes
This documentation is automatically derived from the comments in the source file function headers.
The functions are documented in the order in which they appear in the source files.
This documentation and the source code are also indexed in SRS as databases EFUNCREL and EDATAREL.
The pages are generated by a Perl script which is easily modifiable.
The most useful libraries for new developers are given in bold italics.
Notes
- This table is automatically generated.
- "Notes" link to library file-specific documentation (bottom of this page). This documentation will be added as part of the general AJAX make-over.
| LIBRARY | DATATYPES | FUNCTIONS | NOTES |
|---|---|---|---|
| Include file for all applications | Datatypes | Notes | |
| Pattern list file reading | Functions | Notes | |
| Pattern matching algorithms | Datatypes | Functions | Notes |
| Signatures of protein domains | Datatypes | Functions | Notes |
| N-mer (word) algorithms | Functions | Notes | |
| Reading data files | Functions | Notes | |
| Groups of applications | Datatypes | Functions | Notes |
| Data file utilities | Functions | Notes | |
| Alignments | Functions | Notes | |
| Comparison matrices | Datatypes | Functions | Notes |
| Properties of protein sequences | Functions | Notes | |
| Miscellaneos methods | Functions | Notes | |
| Isoelectric point utilities | Functions | Notes | |
| Comments | Functions | Notes | |
| Consensus sequences | Functions | Notes | |
| Exit calls for applications | Functions | Notes | |
| EST algorithms | Datatypes | Functions | Notes |
| Indexing databases using B+ trees | Datatypes | Functions | Notes |
| Showing sequences in pretty formats | Datatypes | Functions | Notes |
| Initialising internals | Functions | Notes | |
| Database indexing using EMBL-CD indices | Datatypes | Functions | Notes |
| Domainatrix package algorithms | Datatypes | Functions | Notes |
| Word matching algorithms | Datatypes | Functions | Notes |
| Protein databank (PDB) structure file utilities | Functions | Notes | |
| Molecular fragment algorithms | Datatypes | Functions | Notes |
| Domain algorithms | Functions | Notes | |
| XYZ 3D coordinate algorithms | Functions | Notes |