embcom.c


Function embComComplexity

Complexity calculation

Synopsis

Prototype
void embComComplexity (
      const char* seq,
      const char* name,
      ajint len,
      ajint jmin,
      ajint jmax,
      ajint l,
      ajint step,
      ajint sim,
      ajint freq,
      ajint omnia,
      AjPFile fp,
      AjPFile pf,
      ajint print,
      float* MedValue
);

TypeNameRead/WriteDescription
const char*seqInputSequence
const char*nameInputSequence name
ajintlenInputSequence length
ajintjminInputMinimum
ajintjmaxInputMaximum
ajintlInputWindow length
ajintstepInputStep size
ajintsimInputSimulation count
ajintfreqInputFrequency calculation (boolean)
ajintomniaInputAll sequences (boolean)
AjPFilefpModifyOutput file
AjPFilepfModifyTemp file
ajintprintInputPrint (boolean)
float*MedValueOutputResults
void RETURN

Input
seq:(Input)Sequence
name:(Input)Sequence name
len:(Input)Sequence length
jmin:(Input)Minimum
jmax:(Input)Maximum
l:(Input)Window length
step:(Input)Step size
sim:(Input)Simulation count
freq:(Input)Frequency calculation (boolean)
omnia:(Input)All sequences (boolean)
print:(Input)Print (boolean)
Output
MedValue:(Output)Results
Input & Output
fp:(Modify)Output file
pf:(Modify)Temp file
Returns
void:No return value

Description

Complexity calculation

Usage

See source code

Example

In preparation

Errors

See source code

Dependencies

See source code

See Also

See other functions in this section

Availability

In release 6.4.0

Function embComWriteFile

Write output file for complexity calculation

Synopsis

Prototype
void embComWriteFile (
      AjPFile fp,
      ajint jmin,
      ajint jmax,
      ajint lwin,
      ajint step,
      ajint sim
);

TypeNameRead/WriteDescription
AjPFilefpModifyOutput file
ajintjminInputMinimum
ajintjmaxInputMaximum
ajintlwinInputWindow
ajintstepInputStep size
ajintsimInputSimulation count
void RETURN

Input
jmin:(Input)Minimum
jmax:(Input)Maximum
lwin:(Input)Window
step:(Input)Step size
sim:(Input)Simulation count
Input & Output
fp:(Modify)Output file
Returns
void:No return value

Description

Write output file for complexity calculation

Usage

See source code

Example

In preparation

Errors

See source code

Dependencies

See source code

See Also

See other functions in this section

Availability

In release 6.4.0

Function embComWriteValueOfSeq

Output sequence values for complexity calculation

Synopsis

Prototype
void embComWriteValueOfSeq (
      AjPFile fp,
      ajint n,
      const char* name,
      ajint len,
      float MedValue
);

TypeNameRead/WriteDescription
AjPFilefpModifyOutput file
ajintnInputSequence number
const char*nameInputSequence name
ajintlenInputSequece length
floatMedValueInputMean value
void RETURN

Input
n:(Input)Sequence number
name:(Input)Sequence name
len:(Input)Sequece length
MedValue:(Input)Mean value
Input & Output
fp:(Modify)Output file
Returns
void:No return value

Description

Output sequence values for complexity calculation

Usage

See source code

Example

In preparation

Errors

See source code

Dependencies

See source code

See Also

See other functions in this section

Availability

In release 6.4.0

Function embComUnused

Unused functions in embcom to avoid compiler warnings

Synopsis

Prototype
void embComUnused (
      void
);

TypeNameRead/WriteDescription
void RETURN

Returns
void:No return value

Description

Unused functions in embcom to avoid compiler warnings

Usage

See source code

Example

In preparation

Errors

See source code

Dependencies

See source code

See Also

See other functions in this section

Availability

In release 6.4.0