embcom.c
Complexity calculation
Synopsis
Prototype
void embComComplexity (
const char* seq,
const char* name,
ajint len,
ajint jmin,
ajint jmax,
ajint l,
ajint step,
ajint sim,
ajint freq,
ajint omnia,
AjPFile fp,
AjPFile pf,
ajint print,
float* MedValue
);
| Type | Name | Read/Write | Description |
|---|
| const char* | seq | Input | Sequence |
| const char* | name | Input | Sequence name |
| ajint | len | Input | Sequence length |
| ajint | jmin | Input | Minimum |
| ajint | jmax | Input | Maximum |
| ajint | l | Input | Window length |
| ajint | step | Input | Step size |
| ajint | sim | Input | Simulation count |
| ajint | freq | Input | Frequency calculation (boolean) |
| ajint | omnia | Input | All sequences (boolean) |
| AjPFile | fp | Modify | Output file |
| AjPFile | pf | Modify | Temp file |
| ajint | print | Input | Print (boolean) |
| float* | MedValue | Output | Results |
| void | | RETURN | |
Input
| seq: | (Input) | Sequence |
| name: | (Input) | Sequence name |
| len: | (Input) | Sequence length |
| jmin: | (Input) | Minimum |
| jmax: | (Input) | Maximum |
| l: | (Input) | Window length |
| step: | (Input) | Step size |
| sim: | (Input) | Simulation count |
| freq: | (Input) | Frequency calculation (boolean) |
| omnia: | (Input) | All sequences (boolean) |
| print: | (Input) | Print (boolean) |
Output
Input & Output
| fp: | (Modify) | Output file |
| pf: | (Modify) | Temp file |
Returns
Description
Complexity calculation
Usage
See source code
Example
In preparation
Errors
See source code
Dependencies
See source code
See Also
See other functions in this section
Availability
In release 6.4.0
Write output file for complexity calculation
Synopsis
Prototype
void embComWriteFile (
AjPFile fp,
ajint jmin,
ajint jmax,
ajint lwin,
ajint step,
ajint sim
);
| Type | Name | Read/Write | Description |
|---|
| AjPFile | fp | Modify | Output file |
| ajint | jmin | Input | Minimum |
| ajint | jmax | Input | Maximum |
| ajint | lwin | Input | Window |
| ajint | step | Input | Step size |
| ajint | sim | Input | Simulation count |
| void | | RETURN | |
Input
| jmin: | (Input) | Minimum |
| jmax: | (Input) | Maximum |
| lwin: | (Input) | Window |
| step: | (Input) | Step size |
| sim: | (Input) | Simulation count |
Input & Output
Returns
Description
Write output file for complexity calculation
Usage
See source code
Example
In preparation
Errors
See source code
Dependencies
See source code
See Also
See other functions in this section
Availability
In release 6.4.0
Output sequence values for complexity calculation
Synopsis
Prototype
void embComWriteValueOfSeq (
AjPFile fp,
ajint n,
const char* name,
ajint len,
float MedValue
);
| Type | Name | Read/Write | Description |
|---|
| AjPFile | fp | Modify | Output file |
| ajint | n | Input | Sequence number |
| const char* | name | Input | Sequence name |
| ajint | len | Input | Sequece length |
| float | MedValue | Input | Mean value |
| void | | RETURN | |
Input
| n: | (Input) | Sequence number |
| name: | (Input) | Sequence name |
| len: | (Input) | Sequece length |
| MedValue: | (Input) | Mean value |
Input & Output
Returns
Description
Output sequence values for complexity calculation
Usage
See source code
Example
In preparation
Errors
See source code
Dependencies
See source code
See Also
See other functions in this section
Availability
In release 6.4.0
Unused functions in embcom to avoid compiler warnings
Synopsis
Prototype
void embComUnused (
void
);
| Type | Name | Read/Write | Description |
|---|
| void | | RETURN | |
Returns
Description
Unused functions in embcom to avoid compiler warnings
Usage
See source code
Example
In preparation
Errors
See source code
Dependencies
See source code
See Also
See other functions in this section
Availability
In release 6.4.0