embdomain.c
These functions use the contents of an instance but do not make any
changes.
Functions: embScopToPdbid embScopToSp embScopToAcc
Read a scop identifier code and writes the equivalent pdb identifier code
Synopsis
Prototype
AjPStr embScopToPdbid (
const AjPStr scop,
AjPStr* pdb
);
| Type | Name | Read/Write | Description |
|---|
| const AjPStr | scop | Input | Scop identifier code |
| AjPStr* | pdb | Output | Pdb identifier code |
| AjPStr | | RETURN | Pointer to pdb identifier code. |
Input
| scop: | (Input) | Scop identifier code |
Output
| pdb: | (Output) | Pdb identifier code |
Returns
| AjPStr: | Pointer to pdb identifier code. |
Description
Read a scop identifier code and writes the equivalent pdb identifier code
Usage
See source code
Example
In preparation
Errors
See source code
Dependencies
See source code
See Also
See other functions in this section
Availability
In release 6.4.0
Read a scop identifier code and writes the equivalent swissprot
identifier code. Relies on a list of Pdbtosp objects sorted by PDB
code, which is usually obtained by a call to ajPdbtospReadAllNew.
Synopsis
Prototype
AjBool embScopToSp (
const AjPStr scop,
AjPStr* spr,
const AjPList list
);
| Type | Name | Read/Write | Description |
|---|
| const AjPStr | scop | Input | Scop domain identifier code |
| AjPStr* | spr | Output | Swissprot identifier code |
| const AjPList | list | Input | Sorted list of Pdbtosp objects |
| AjBool | | RETURN | True if a swissprot identifier code was
found for the Scop code. |
Input
| scop: | (Input) | Scop domain identifier code |
| list: | (Input) | Sorted list of Pdbtosp objects |
Output
| spr: | (Output) | Swissprot identifier code |
Returns
| AjBool: | True if a swissprot identifier code was
found for the Scop code. |
Description
Read a scop identifier code and writes the equivalent swissprot
identifier code. Relies on a list of Pdbtosp objects sorted by PDB
code, which is usually obtained by a call to ajPdbtospReadAllNew.
Usage
See source code
Example
In preparation
Errors
See source code
Dependencies
See source code
See Also
See other functions in this section
Availability
In release 6.4.0
Read a scop identifier code and writes the equivalent accession number.
Relies on a list of Pdbtosp objects sorted by PDB code, which is usually
obtained by a call to ajPdbtospReadAllNew.
Synopsis
Prototype
AjBool embScopToAcc (
const AjPStr scop,
AjPStr* acc,
const AjPList list
);
| Type | Name | Read/Write | Description |
|---|
| const AjPStr | scop | Input | Scop domain identifier code |
| AjPStr* | acc | Output | Accession number |
| const AjPList | list | Input | Sorted list of Pdbtosp objects |
| AjBool | | RETURN | True if a swissprot identifier code was found for the
Scop code. |
Input
| scop: | (Input) | Scop domain identifier code |
| list: | (Input) | Sorted list of Pdbtosp objects |
Output
| acc: | (Output) | Accession number |
Returns
| AjBool: | True if a swissprot identifier code was found for the
Scop code. |
Description
Read a scop identifier code and writes the equivalent accession number.
Relies on a list of Pdbtosp objects sorted by PDB code, which is usually
obtained by a call to ajPdbtospReadAllNew.
Usage
See source code
Example
In preparation
Errors
See source code
Dependencies
See source code
See Also
See other functions in this section
Availability
In release 6.4.0