Chapter 2. Building EMBASSY
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Chapter 2. Building EMBASSY
Table of Contents
2.1. Introduction to EMBASSY
2.2. Downloading the EMBASSY Packages
2.2.1. Unpacking the Source Code
2.3. Building the EMBASSY Packages
2.4. Configuring the EMBASSY Packages
2.4.1. A Simple Configuration
2.4.1.1.
CBSTOOLS
2.4.1.2.
DOMAINATRIX
2.4.1.3.
DOMALIGN
2.4.1.4.
DOMSEARCH
2.4.1.5.
EMNU
2.4.1.6.
ESIM4
2.4.1.7.
HMMER
2.4.1.8.
IPRSCAN
2.4.1.9.
MEME
2.4.1.10.
MIRA
2.4.1.11.
MSE
2.4.1.12.
MYEMBOSS
2.4.1.13.
MYEMBOSSDEMO
2.4.1.14.
PHYLIP
2.4.1.15.
SIGNATURE
2.4.1.16.
STRUCTURE
2.4.1.17.
TOPO
2.4.1.18.
VIENNA
2.5. Compiling the EMBASSY Packages
2.5.1. Reporting Compilation Errors
2.6. Installing the EMBASSY Packages
2.7. Post-installation of the EMBASSY Packages
2.7.1. Testing an EMBASSY Installation
2.7.2. Deleting an EMBASSY Package
2.7.3. Keeping EMBASSY up to Date
2.7.4. Reinstallation of EMBASSY and EMBOSS
2.8. EMBASSY Installation: Platform-specific Concerns
2.8.1. Linux RPM Distributions
2.8.1.1. General Prerequisites
2.8.1.2.
Ncurses
prerequisites
2.8.2. Linux Debian Distributions
2.8.2.1. General Prerequisites
2.8.2.2.
Ncurses
prerequisites
2.8.3. MacOSX
2.8.3.1. General Prerequisites
2.8.3.2.
Ncurses
prerequisites
2.8.4. IRIX
2.8.4.1. General Prerequisites
2.8.4.2.
Ncurses
prerequisites
2.8.5. Tru64
2.8.5.1. General Prerequisites
2.8.5.2.
Ncurses
prerequisites
2.8.6. Solaris
2.8.6.1. General Prerequisites
2.8.6.2.
Ncurses
prerequisites