|
|
ohmmbuild |
Please help by correcting and extending the Wiki pages.
% ohmmbuild globins50.msf globin.hmm -auto hmmbuild - build a hidden Markov model from an alignment HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Training alignment: ../../data/hmm/globins50.msf Number of sequences: 50 Search algorithm configuration: Local (hmmsw) S/W aggregate entry probability: 0.50 S/W aggregate exit probability: 0.50 Model construction strategy: Fast/ad hoc (gapmax 0.50) Null model used: (default) Prior used: (default) Prior strategy: Dirichlet Sequence weighting method: G/S/C tree weights - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Determining effective sequence number ... done. [13] Weighting sequences heuristically ... done. Constructing model architecture ... done. Saving count vector file ... done. [globins50.out3] Converting counts to probabilities ... done. Setting model name, etc. ... Constructed a profile HMM (length 147) Average score: 280.62 bits Minimum score: 96.03 bits Maximum score: 340.28 bits Std. deviation: 58.76 bits Finalizing model configuration ... done. Saving model to file ... done. [globin.hmm] Saving annotated alignment ... done. [globins50.out2] |
Go to the input files for this example
Go to the output files for this example
Build HMM
Version: EMBOSS:6.4.0.0
Standard (Mandatory) qualifiers:
[-sequences] seqset (Aligned) protein sequence set filename and
optional format, or reference (input USA)
[-outfile] outfile [*.ohmmbuild] HMMER hidden markov model
output file
Additional (Optional) qualifiers: (none)
Advanced (Unprompted) qualifiers:
-priorfile infile HMMER dirichlet prior file (optional)
-nullfile infile HMMER null model file (optional)
-pamfile infile HMMER matrix file (optional)
-strategy menu [L] Select preference (Values: M (multiple);
L (local); G (global))
-append boolean [N] Append to file
-amino boolean [N] Treat as protein
-nucleic boolean [N] Treat as dna
-archpri float [0.85] Architecture prior (Any numeric
value)
-binary boolean [N] Write HMM as binary
-cstrategy menu [F] Select strategy (Values: F (Fast); H
(Hand))
-fast boolean [N] Work in fast mode
-gapmax float [0.5] Fast mode control (Any numeric value)
-hand boolean [N] Specify model by hand
-idlevel float [0.62] Cutoff ID threhold (Any numeric
value)
-[no]efficiency boolean [Y] Be efficient
-pamweight float [20.0] Weighting for PAM (Any numeric value)
-swentry float [0.5] Probability control for local entries
(Any numeric value)
-swexit float [0.5] Probability control for exits (Any
numeric value)
-more boolean [N] Verbosity
-weighting menu [G] Select weighting (Values: B (Blosum); G
(Gerstein/Sonnhammer/Chothia); K
(Krogh/Mitchison); N (None); V (Voronoi))
-resavefile outfile [*.ohmmbuild] Selex alignment output file
(optional)
-cfile outfile [*.ohmmbuild] HMMER emission and transition
count output file (optional)
Associated qualifiers:
"-sequences" associated qualifiers
-sbegin1 integer Start of each sequence to be used
-send1 integer End of each sequence to be used
-sreverse1 boolean Reverse (if DNA)
-sask1 boolean Ask for begin/end/reverse
-snucleotide1 boolean Sequence is nucleotide
-sprotein1 boolean Sequence is protein
-slower1 boolean Make lower case
-supper1 boolean Make upper case
-sformat1 string Input sequence format
-sdbname1 string Database name
-sid1 string Entryname
-ufo1 string UFO features
-fformat1 string Features format
-fopenfile1 string Features file name
"-outfile" associated qualifiers
-odirectory2 string Output directory
"-resavefile" associated qualifiers
-odirectory string Output directory
"-cfile" associated qualifiers
-odirectory string Output directory
General qualifiers:
-auto boolean Turn off prompts
-stdout boolean Write first file to standard output
-filter boolean Read first file from standard input, write
first file to standard output
-options boolean Prompt for standard and additional values
-debug boolean Write debug output to program.dbg
-verbose boolean Report some/full command line options
-help boolean Report command line options and exit. More
information on associated and general
qualifiers can be found with -help -verbose
-warning boolean Report warnings
-error boolean Report errors
-fatal boolean Report fatal errors
-die boolean Report dying program messages
-version boolean Report version number and exit
|
| Qualifier | Type | Description | Allowed values | Default | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Standard (Mandatory) qualifiers | ||||||||||||||
| [-sequences] (Parameter 1) |
seqset | (Aligned) protein sequence set filename and optional format, or reference (input USA) | Readable set of sequences | Required | ||||||||||
| [-outfile] (Parameter 2) |
outfile | HMMER hidden markov model output file | Output file | <*>.ohmmbuild | ||||||||||
| Additional (Optional) qualifiers | ||||||||||||||
| (none) | ||||||||||||||
| Advanced (Unprompted) qualifiers | ||||||||||||||
| -priorfile | infile | HMMER dirichlet prior file (optional) | Input file | Required | ||||||||||
| -nullfile | infile | HMMER null model file (optional) | Input file | Required | ||||||||||
| -pamfile | infile | HMMER matrix file (optional) | Input file | Required | ||||||||||
| -strategy | list | Select preference |
|
L | ||||||||||
| -append | boolean | Append to file | Boolean value Yes/No | No | ||||||||||
| -amino | boolean | Treat as protein | Boolean value Yes/No | No | ||||||||||
| -nucleic | boolean | Treat as dna | Boolean value Yes/No | No | ||||||||||
| -archpri | float | Architecture prior | Any numeric value | 0.85 | ||||||||||
| -binary | boolean | Write HMM as binary | Boolean value Yes/No | No | ||||||||||
| -cstrategy | list | Select strategy |
|
F | ||||||||||
| -fast | boolean | Work in fast mode | Boolean value Yes/No | No | ||||||||||
| -gapmax | float | Fast mode control | Any numeric value | 0.5 | ||||||||||
| -hand | boolean | Specify model by hand | Boolean value Yes/No | No | ||||||||||
| -idlevel | float | Cutoff ID threhold | Any numeric value | 0.62 | ||||||||||
| -[no]efficiency | boolean | Be efficient | Boolean value Yes/No | Yes | ||||||||||
| -pamweight | float | Weighting for PAM | Any numeric value | 20.0 | ||||||||||
| -swentry | float | Probability control for local entries | Any numeric value | 0.5 | ||||||||||
| -swexit | float | Probability control for exits | Any numeric value | 0.5 | ||||||||||
| -more | boolean | Verbosity | Boolean value Yes/No | No | ||||||||||
| -weighting | list | Select weighting |
|
G | ||||||||||
| -resavefile | outfile | Selex alignment output file (optional) | Output file | <*>.ohmmbuild | ||||||||||
| -cfile | outfile | HMMER emission and transition count output file (optional) | Output file | <*>.ohmmbuild | ||||||||||
| Associated qualifiers | ||||||||||||||
| "-sequences" associated seqset qualifiers | ||||||||||||||
| -sbegin1 -sbegin_sequences |
integer | Start of each sequence to be used | Any integer value | 0 | ||||||||||
| -send1 -send_sequences |
integer | End of each sequence to be used | Any integer value | 0 | ||||||||||
| -sreverse1 -sreverse_sequences |
boolean | Reverse (if DNA) | Boolean value Yes/No | N | ||||||||||
| -sask1 -sask_sequences |
boolean | Ask for begin/end/reverse | Boolean value Yes/No | N | ||||||||||
| -snucleotide1 -snucleotide_sequences |
boolean | Sequence is nucleotide | Boolean value Yes/No | N | ||||||||||
| -sprotein1 -sprotein_sequences |
boolean | Sequence is protein | Boolean value Yes/No | N | ||||||||||
| -slower1 -slower_sequences |
boolean | Make lower case | Boolean value Yes/No | N | ||||||||||
| -supper1 -supper_sequences |
boolean | Make upper case | Boolean value Yes/No | N | ||||||||||
| -sformat1 -sformat_sequences |
string | Input sequence format | Any string | |||||||||||
| -sdbname1 -sdbname_sequences |
string | Database name | Any string | |||||||||||
| -sid1 -sid_sequences |
string | Entryname | Any string | |||||||||||
| -ufo1 -ufo_sequences |
string | UFO features | Any string | |||||||||||
| -fformat1 -fformat_sequences |
string | Features format | Any string | |||||||||||
| -fopenfile1 -fopenfile_sequences |
string | Features file name | Any string | |||||||||||
| "-outfile" associated outfile qualifiers | ||||||||||||||
| -odirectory2 -odirectory_outfile |
string | Output directory | Any string | |||||||||||
| "-resavefile" associated outfile qualifiers | ||||||||||||||
| -odirectory | string | Output directory | Any string | |||||||||||
| "-cfile" associated outfile qualifiers | ||||||||||||||
| -odirectory | string | Output directory | Any string | |||||||||||
| General qualifiers | ||||||||||||||
| -auto | boolean | Turn off prompts | Boolean value Yes/No | N | ||||||||||
| -stdout | boolean | Write first file to standard output | Boolean value Yes/No | N | ||||||||||
| -filter | boolean | Read first file from standard input, write first file to standard output | Boolean value Yes/No | N | ||||||||||
| -options | boolean | Prompt for standard and additional values | Boolean value Yes/No | N | ||||||||||
| -debug | boolean | Write debug output to program.dbg | Boolean value Yes/No | N | ||||||||||
| -verbose | boolean | Report some/full command line options | Boolean value Yes/No | Y | ||||||||||
| -help | boolean | Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose | Boolean value Yes/No | N | ||||||||||
| -warning | boolean | Report warnings | Boolean value Yes/No | Y | ||||||||||
| -error | boolean | Report errors | Boolean value Yes/No | Y | ||||||||||
| -fatal | boolean | Report fatal errors | Boolean value Yes/No | Y | ||||||||||
| -die | boolean | Report dying program messages | Boolean value Yes/No | Y | ||||||||||
| -version | boolean | Report version number and exit | Boolean value Yes/No | N | ||||||||||
MSF: 171 Type: P Check: 4694 .. Name: GLB2_MORMR oo Len: 171 Check: 6522 Weight: 2.7687 Name: GLBZ_CHITH oo Len: 171 Check: 6733 Weight: 2.9329 Name: HBA2_BOSMU oo Len: 171 Check: 5006 Weight: 0.6394 Name: HBA2_GALCR oo Len: 171 Check: 6652 Weight: 0.5183 Name: HBA4_SALIR oo Len: 171 Check: 5434 Weight: 1.9511 Name: HBAD_CHLME oo Len: 171 Check: 6621 Weight: 1.2927 Name: HBAD_PASMO oo Len: 171 Check: 8118 Weight: 1.2927 Name: HBAZ_HORSE oo Len: 171 Check: 8382 Weight: 1.6223 Name: HBA_AILME oo Len: 171 Check: 5402 Weight: 0.4145 Name: HBA_ANSSE oo Len: 171 Check: 3688 Weight: 0.8315 Name: HBA_COLLI oo Len: 171 Check: 4420 Weight: 0.8557 Name: HBA_ERIEU oo Len: 171 Check: 5528 Weight: 0.8390 Name: HBA_FRAPO oo Len: 171 Check: 4136 Weight: 0.5014 Name: HBA_MACFA oo Len: 171 Check: 5986 Weight: 0.2233 Name: HBA_MACSI oo Len: 171 Check: 6064 Weight: 0.2233 Name: HBA_MESAU oo Len: 171 Check: 5499 Weight: 0.6722 Name: HBA_PAGLA oo Len: 171 Check: 6189 Weight: 0.5388 Name: HBA_PHACO oo Len: 171 Check: 5129 Weight: 0.5014 Name: HBA_PONPY oo Len: 171 Check: 5894 Weight: 0.3907 Name: HBA_PROLO oo Len: 171 Check: 5810 Weight: 0.4145 Name: HBA_TRIOC oo Len: 171 Check: 6427 Weight: 0.6883 Name: HBB1_VAREX oo Len: 171 Check: 7239 Weight: 1.1252 Name: HBB2_TRICR oo Len: 171 Check: 7790 Weight: 1.9629 Name: HBB2_XENTR oo Len: 171 Check: 9537 Weight: 1.4685 Name: HBBL_RANCA oo Len: 171 Check: 7490 Weight: 1.4685 Name: HBB_CALAR oo Len: 171 Check: 6568 Weight: 0.4226 Name: HBB_COLLI oo Len: 171 Check: 5043 Weight: 0.7672 Name: HBB_EQUHE oo Len: 171 Check: 6101 Weight: 0.6734 Name: HBB_LARRI oo Len: 171 Check: 5673 Weight: 0.7672 Name: HBB_MANSP oo Len: 171 Check: 7148 Weight: 0.4226 Name: HBB_ORNAN oo Len: 171 Check: 6249 Weight: 0.6615 Name: HBB_RABIT oo Len: 171 Check: 7043 Weight: 0.5259 Name: HBB_SPECI oo Len: 171 Check: 3680 Weight: 0.5422 Name: HBB_SPETO oo Len: 171 Check: 4246 Weight: 0.5422 Name: HBB_SUNMU oo Len: 171 Check: 5601 Weight: 0.6734 Name: HBB_TACAC oo Len: 171 Check: 7133 Weight: 0.6615 Name: HBB_TRIIN oo Len: 171 Check: 4009 Weight: 0.8445 Name: HBB_TUPGL oo Len: 171 Check: 7197 Weight: 0.7375 Name: HBB_URSMA oo Len: 171 Check: 7200 Weight: 0.4695 Name: HBE_PONPY oo Len: 171 Check: 5902 Weight: 1.0101 Name: HBF1_URECA oo Len: 171 Check: 6462 Weight: 2.9329 Name: LGB1_PEA oo Len: 171 Check: 4791 Weight: 2.0005 Name: LGB1_VICFA oo Len: 171 Check: 7426 Weight: 2.0005 Name: MYG_ESCGI oo Len: 171 Check: 9170 Weight: 0.7432 Name: MYG_HORSE oo Len: 171 Check: 1290 Weight: 0.7432 Name: MYG_LYCPI oo Len: 171 Check: 1107 Weight: 0.8773 [Part of this file has been deleted for brevity] GLB2_MORMR KLMSMICILL SSAY...... . GLBZ_CHITH ATFDAFFGAV FAK....... M HBA2_BOSMU KFLANVSTVL TSKYR..... . HBA2_GALCR KFMASVSTVL TSKYR..... . HBA4_SALIR KFLQQLALAL AEKYR..... . HBAD_CHLME KFLSAVAAVL AEKYR..... . HBAD_PASMO KFMSAVASVL AEKYR..... . HBAZ_HORSE KFLSIVSSVL TEKYR..... . HBA_AILME KFFSAVSTVL TSKYR..... . HBA_ANSSE KFLCAVATVL TAKYR..... . HBA_COLLI KFVLAVGTVL TAKYR..... . HBA_ERIEU KFLATVATVL TSKYR..... . HBA_FRAPO KFLCAVGNVL TAKYR..... . HBA_MACFA KFLASVSTVL TSKYR..... . HBA_MACSI KFLASVSTVL TSKYR..... . HBA_MESAU KFFASVSTVL TSKYR..... . HBA_PAGLA KFFSAVSTVL TSKYR..... . HBA_PHACO KFLCAVGTVL TAKYR..... . HBA_PONPY KFLASVSTVL TSKYR..... . HBA_PROLO KFFTSVSTVL TSKYR..... . HBA_TRIOC KFLCAVGNVL SAKYR..... . HBB1_VAREX KLVNVVSHSL ARRYH..... . HBB2_TRICR KLMKGVSHAL GHGY...... . HBB2_XENTR KLNATLVAAL SHGYF..... . HBBL_RANCA KFIAVLVDAL SHSYH..... . HBB_CALAR KVVAGVANAL AHKYH..... . HBB_COLLI KLVRVVAHAL ARKYH..... . HBB_EQUHE KVVAGVANAL AHKYH..... . HBB_LARRI KLVRVVAHAL ARKYH..... . HBB_MANSP KVVAGVANAL AHKYH..... . HBB_ORNAN KLVSGVAHAL GHKYH..... . HBB_RABIT KVVAGVANAL AHKYH..... . HBB_SPECI KVVAGVANAL AHKYH..... . HBB_SPETO KVVAGVANAL SHKYH..... . HBB_SUNMU KVVAGVANAL AHKYH..... . HBB_TACAC KLVSGVSHAL AHKYH..... . HBB_TRIIN KVVAGVANAL AHKYH..... . HBB_TUPGL KVVAGVANAL AHKYH..... . HBB_URSMA KVVAGVANAL AHKYH..... . HBE_PONPY KLVSAVAIAL AHKYH..... . HBF1_URECA DAAGVLVAAM .......... K LGB1_PEA VAYDGLATAI KKAMKT.... A LGB1_VICFA VAYDGLATAI K....A.... A MYG_ESCGI KALELFRKDI AAKYKELGFQ G MYG_HORSE KALELFRNDI AAKYKELGFQ G MYG_LYCPI KALELFRNDI AAKYKELGFQ G MYG_MOUSE KALELFRNDI AAKYKELGFQ G MYG_MUSAN GAFKIICSDI EKEYKAANFQ G MYG_PROGU KALELFRNDI AAKYKELGFQ G MYG_SAISC KALELFRNDM AAKYKELGFQ G |
HMMER2.0
NAME GLB2_MORMR
ACC
DESC
LENG 147
ALPH Amino
RF yes
CS yes
MAP yes
COM ohmmbuild ../../data/hmm/globins50.msf globin.hmm -auto
NSEQ 50
DATE Fri Jul 15 12:00:00 2011
CKSUM 8939
XT -8455 -4 0 * -8455 -4 0 *
NULT -4 -8455
NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644
HMM A C D E F G H I K L M N P Q R S T V W Y
m->m m->i m->d i->m i->i d->m d->d b->m m->e
-104 * -3846
1 -1478 -1780 -402 -384 -1798 746 -1522 195 -1557 -1660 1115 -1800 -97 -1422 -1853 13 -1419 2556 -2187 -1765 4
P -143 -495 230 41 -385 395 124 -625 208 -465 -725 274 391 47 92 364 113 -364 -299 -254
P -1004 -1008 -9940 -2163 -365 -701 -1378 -1104 -8190
2 -3899 -3461 -5717 -754 -329 -5403 -3143 -1795 -4957 2999 -1134 -4739 -5080 -4188 -4625 -4609 -3788 -2395 3057 -1547 16
L -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
L -9 -8898 -9940 -894 -1115 -701 -1378 -8294 -8185
3 -1995 -2562 -4756 -4903 948 -2899 -4002 -4323 -4709 -4557 -3803 -3536 -3665 -4271 -4506 2845 2539 -3465 -4401 -3785 17
S -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
S -9 -8898 -9940 -894 -1115 -701 -1378 -8294 -8180
4 1974 -2894 1467 -816 -3309 781 -1179 -3058 963 -3017 -2101 -1116 189 -730 -1296 -776 170 -2597 -3194 -2516 18
D -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
D -9 -8898 -9940 -894 -1115 -701 -1378 -8294 -8175
5 1383 -2883 585 1876 -3204 405 -1043 -2954 287 -2899 -1973 -61 -2477 990 -1132 -921 -518 -602 -3067 -2384 19
A -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
A -9 -8964 -10006 -894 -1115 -701 -1378 -8294 -8170
6 -3444 -5495 2619 2744 -5608 -3223 -2646 -5588 -3024 -5423 -4830 874 -3800 1490 -3998 -3057 -3535 -5032 -5625 -4510 20
E -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
E -9 -8964 -10006 -894 -1115 -701 -1378 -8294 -8165
7 -2536 -2957 -3306 -2413 -3119 -3548 -1859 874 3060 -1039 -2114 -2413 -446 -1563 710 -2671 -2388 -2506 3242 -2796 21
K -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
K -9 -8964 -10006 -894 -1115 -701 -1378 -8294 -8160
8 1087 -2878 -1251 152 -3199 57 -1039 -2949 1245 -2894 -1968 1023 -478 1653 -1127 491 694 -2500 -3062 -2379 22
N -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
N -9 -8964 -10006 -894 -1115 -701 -1378 -8294 -8155
9 998 -413 -1742 -198 -2292 -825 -1300 -1037 714 1062 420 2005 -2677 -395 -1494 -1541 -425 -661 -2537 -2029 23
K -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
K -9 -8964 -10006 -894 -1115 -701 -1378 -8294 -8150
10 -3221 -2748 -5841 -5461 -3140 -5557 -5075 2551 -5338 -1071 -1986 -5198 -5343 -5155 -5383 -4856 -3201 2966 -4560 1098 24
I -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
I -9 -8964 -10006 -894 -1115 -701 -1378 -8294 -8145
11 0 29 -1335 -786 -2969 -2418 -1085 -1608 1448 -65 -1823 700 -2509 1617 182 529 1205 -899 -2941 -2302 25
[Part of this file has been deleted for brevity]
F -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
F -13 -8968 -10010 -894 -1115 -701 -1378 -8294 -7340
132 -1696 -3203 2107 1686 -3513 508 -1292 -3276 -99 -3215 -2304 -545 -2698 2093 -1462 197 -974 -2821 -3384 -2676 150
E -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
E -13 -8968 -10010 -894 -1115 -701 -1378 -8294 -7331
133 -206 -3207 301 -1311 -3800 -540 -1754 -3505 3357 -3525 -2667 -1586 -3037 -1345 -1850 -1908 -2007 106 -3732 -3091 151
K -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
K -13 -8968 -10010 -894 -1115 -701 -1378 -8294 -7322
134 1654 -1721 -4245 -3631 2645 -3462 -2390 -910 -3244 1144 -791 -3131 -3508 -2856 -3053 -2564 87 891 -2223 -1892 152
L -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
L -13 -8968 -10010 -894 -1115 -701 -1378 -8294 -7313
135 -137 -1432 -3948 -3313 1581 -3155 -2026 -114 -2909 1428 2225 -648 -3203 -2531 -2710 -2240 -1547 1624 -1889 1109 153
M -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
M -13 -8968 -10010 -894 -1115 -701 -1378 -8294 -7304
136 1325 1101 1112 721 -3197 -363 -1036 -2947 702 -1945 -1965 -289 -2471 375 -257 1183 -1037 -2498 -3059 -2377 154
S -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
S -13 -8968 -10010 -894 -1115 -701 -1378 -8294 -7295
137 1277 -1469 -3536 -2925 -1430 1509 -1928 601 -2600 216 1186 -1524 -3132 -175 -2535 -508 -85 1083 -1920 -1568 155
M -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
M -14 -8968 -10010 -894 -1115 -701 -1378 -8294 -7285
138 -3610 -3121 -6153 -5690 1786 -5837 -5020 1076 -5518 1386 -1290 -5502 -5406 -4901 -5339 -5127 -3551 2808 -4105 -3986 156
I -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
I -14 -8968 -10010 -894 -1115 -701 -1378 -8294 -7276
139 2030 2259 -3344 -2779 473 -514 -2054 -1307 -2515 -1647 -982 -2529 -3154 -2266 681 1110 -1625 881 -2225 -1864 157
C -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
C -14 -8968 -10011 -894 -1115 -701 -1378 -8294 -7267
140 502 -2761 -339 -762 -3031 -384 1988 -18 -326 -1254 -1863 1897 -2499 -629 -1172 471 1548 -2356 -2975 -2324 158
I -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
I -14 -8968 -10011 -894 -1115 -701 -1378 -8294 -7257
141 2557 -2132 1224 -2787 -2497 -3049 -2499 -1705 -2776 -586 -1671 -2638 -3386 -2536 -2949 -1127 -1982 1773 -2964 -2581 159
L -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
L -14 -8969 -10011 -894 -1115 -701 -1378 -8294 -7248
142 -4284 -3705 -6735 -6190 -2138 -6510 -5341 1840 -6011 2724 1723 -6217 -5667 -4910 -5578 -5867 -4158 115 -3948 -4121 160
L -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
L -14 -8884 -9926 -894 -1115 -701 -1378 -8294 -7238
143 1959 -2667 -1304 160 207 -440 -1064 -2658 652 -2686 -1806 -1057 -2476 -630 -1169 822 1391 -2278 -2923 -2284 161
S -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
S -14 -8825 -9867 -894 -1115 -701 -1378 -8294 -7229
144 1365 -2863 -1251 1036 -3195 -2373 3163 -2932 818 -2872 -1957 -1010 -2467 -558 298 930 -1351 -2492 -3031 -2370 162
S -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
S -14 -8825 -9868 -894 -1115 -701 -1378 -8294 -7219
145 360 -3058 -1454 144 -3448 -36 -1205 -3163 3161 -3086 -2193 -1228 -2682 -756 -274 -567 -1600 -2731 -3220 -2602 163
A -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
A -15 -8733 -9776 -894 -1115 -701 -1378 -8294 -7209
146 -5001 -4245 -5636 -5890 -650 -5388 -2113 -3919 -5374 -3258 935 -4373 -5399 -4454 -4899 -4809 -4973 -4162 -1378 4785 164
Y -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
Y -15 -8575 -9617 -894 -1115 -701 -1378 -8294 -7200
147 -3220 -3923 -3873 -2549 -201 -3790 3575 -4055 2069 -3728 -3058 -2457 -3723 -1277 2773 -3101 -2911 -3829 -3495 -3253 165
- * * * * * * * * * * * * * * * * * * * *
- * * * * * * * -8294 0
//
|
#=AU HMMER 2.1.1 #=SQ GLB2_MORMR 0.7013 GLB2_MORMR - 0..0::0 - #=SQ GLBZ_CHITH 0.7742 GLBZ_CHITH - 0..0::0 - #=SQ HBA2_BOSMU 0.1490 HBA2_BOSMU - 0..0::0 - #=SQ HBA2_GALCR 0.1303 HBA2_GALCR - 0..0::0 - #=SQ HBA4_SALIR 0.4958 HBA4_SALIR - 0..0::0 - #=SQ HBAD_CHLME 0.3491 HBAD_CHLME - 0..0::0 - #=SQ HBAD_PASMO 0.3491 HBAD_PASMO - 0..0::0 - #=SQ HBAZ_HORSE 0.4250 HBAZ_HORSE - 0..0::0 - #=SQ HBA_AILME 0.1053 HBA_AILME - 0..0::0 - #=SQ HBA_ANSSE 0.2173 HBA_ANSSE - 0..0::0 - #=SQ HBA_COLLI 0.2297 HBA_COLLI - 0..0::0 - #=SQ HBA_ERIEU 0.2146 HBA_ERIEU - 0..0::0 - #=SQ HBA_FRAPO 0.1349 HBA_FRAPO - 0..0::0 - #=SQ HBA_MACFA 0.0579 HBA_MACFA - 0..0::0 - #=SQ HBA_MACSI 0.0579 HBA_MACSI - 0..0::0 - #=SQ HBA_MESAU 0.1699 HBA_MESAU - 0..0::0 - #=SQ HBA_PAGLA 0.1331 HBA_PAGLA - 0..0::0 - #=SQ HBA_PHACO 0.1349 HBA_PHACO - 0..0::0 - #=SQ HBA_PONPY 0.1014 HBA_PONPY - 0..0::0 - #=SQ HBA_PROLO 0.1053 HBA_PROLO - 0..0::0 - #=SQ HBA_TRIOC 0.1835 HBA_TRIOC - 0..0::0 - #=SQ HBB1_VAREX 0.2879 HBB1_VAREX - 0..0::0 - #=SQ HBB2_TRICR 0.5211 HBB2_TRICR - 0..0::0 - #=SQ HBB2_XENTR 0.4019 HBB2_XENTR - 0..0::0 - #=SQ HBBL_RANCA 0.4019 HBBL_RANCA - 0..0::0 - #=SQ HBB_CALAR 0.1119 HBB_CALAR - 0..0::0 - #=SQ HBB_COLLI 0.1918 HBB_COLLI - 0..0::0 - #=SQ HBB_EQUHE 0.1787 HBB_EQUHE - 0..0::0 - #=SQ HBB_LARRI 0.1918 HBB_LARRI - 0..0::0 - #=SQ HBB_MANSP 0.1119 HBB_MANSP - 0..0::0 - #=SQ HBB_ORNAN 0.1693 HBB_ORNAN - 0..0::0 - #=SQ HBB_RABIT 0.1284 HBB_RABIT - 0..0::0 - #=SQ HBB_SPECI 0.1323 HBB_SPECI - 0..0::0 - #=SQ HBB_SPETO 0.1323 HBB_SPETO - 0..0::0 - #=SQ HBB_SUNMU 0.1725 HBB_SUNMU - 0..0::0 - #=SQ HBB_TACAC 0.1693 HBB_TACAC - 0..0::0 - #=SQ HBB_TRIIN 0.1918 HBB_TRIIN - 0..0::0 - #=SQ HBB_TUPGL 0.1918 HBB_TUPGL - 0..0::0 - #=SQ HBB_URSMA 0.1221 HBB_URSMA - 0..0::0 - #=SQ HBE_PONPY 0.2395 HBE_PONPY - 0..0::0 - #=SQ HBF1_URECA 0.7874 HBF1_URECA - 0..0::0 - #=SQ LGB1_PEA 0.5206 LGB1_PEA - 0..0::0 - #=SQ LGB1_VICFA 0.5206 LGB1_VICFA - 0..0::0 - #=SQ MYG_ESCGI 0.1987 MYG_ESCGI - 0..0::0 - #=SQ MYG_HORSE 0.1987 MYG_HORSE - 0..0::0 - #=SQ MYG_LYCPI 0.2397 MYG_LYCPI - 0..0::0 - #=SQ MYG_MOUSE 0.2397 MYG_MOUSE - 0..0::0 - #=SQ MYG_MUSAN 0.6181 MYG_MUSAN - 0..0::0 - #=SQ MYG_PROGU 0.2044 MYG_PROGU - 0..0::0 - [Part of this file has been deleted for brevity] GLB2_MORMR KLMSMICILLSSAY-...... GLBZ_CHITH ATFDAFFGAVFAK--m..... HBA2_BOSMU KFLANVSTVLTSKYR...... HBA2_GALCR KFMASVSTVLTSKYR...... HBA4_SALIR KFLQQLALALAEKYR...... HBAD_CHLME KFLSAVAAVLAEKYR...... HBAD_PASMO KFMSAVASVLAEKYR...... HBAZ_HORSE KFLSIVSSVLTEKYR...... HBA_AILME KFFSAVSTVLTSKYR...... HBA_ANSSE KFLCAVATVLTAKYR...... HBA_COLLI KFVLAVGTVLTAKYR...... HBA_ERIEU KFLATVATVLTSKYR...... HBA_FRAPO KFLCAVGNVLTAKYR...... HBA_MACFA KFLASVSTVLTSKYR...... HBA_MACSI KFLASVSTVLTSKYR...... HBA_MESAU KFFASVSTVLTSKYR...... HBA_PAGLA KFFSAVSTVLTSKYR...... HBA_PHACO KFLCAVGTVLTAKYR...... HBA_PONPY KFLASVSTVLTSKYR...... HBA_PROLO KFFTSVSTVLTSKYR...... HBA_TRIOC KFLCAVGNVLSAKYR...... HBB1_VAREX KLVNVVSHSLARRYH...... HBB2_TRICR KLMKGVSHALGHGY-...... HBB2_XENTR KLNATLVAALSHGYF...... HBBL_RANCA KFIAVLVDALSHSYH...... HBB_CALAR KVVAGVANALAHKYH...... HBB_COLLI KLVRVVAHALARKYH...... HBB_EQUHE KVVAGVANALAHKYH...... HBB_LARRI KLVRVVAHALARKYH...... HBB_MANSP KVVAGVANALAHKYH...... HBB_ORNAN KLVSGVAHALGHKYH...... HBB_RABIT KVVAGVANALAHKYH...... HBB_SPECI KVVAGVANALAHKYH...... HBB_SPETO KVVAGVANALSHKYH...... HBB_SUNMU KVVAGVANALAHKYH...... HBB_TACAC KLVSGVSHALAHKYH...... HBB_TRIIN KVVAGVANALAHKYH...... HBB_TUPGL KVVAGVANALAHKYH...... HBB_URSMA KVVAGVANALAHKYH...... HBE_PONPY KLVSAVAIALAHKYH...... HBF1_URECA DAAGVLVAAM-----k..... LGB1_PEA VAYDGLATAIKKAMKta.... LGB1_VICFA VAYDGLATAIK----aa.... MYG_ESCGI KALELFRKDIAAKYKelgfqg MYG_HORSE KALELFRNDIAAKYKelgfqg MYG_LYCPI KALELFRNDIAAKYKelgfqg MYG_MOUSE KALELFRNDIAAKYKelgfqg MYG_MUSAN GAFKIICSDIEKEYKaanfqg MYG_PROGU KALELFRNDIAAKYKelgfqg MYG_SAISC KALELFRNDMAAKYKelgfqg |
M 0.00 0.00 0.52 0.52 0.00 1.87 0.00 0.77 0.00 0.00 0.70 0.00 0.70 0.00 0.00 0.92 0.00 6.37 0.00 0.00 M 0.00 0.00 0.00 0.52 0.24 0.00 0.00 0.00 0.00 10.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 M 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.91 4.43 0.00 0.00 0.00 M 4.86 0.00 2.25 0.00 0.00 1.89 0.00 0.00 1.47 0.00 0.00 0.00 0.86 0.00 0.00 0.26 0.79 0.00 0.00 0.00 M 3.31 0.00 1.12 3.79 0.00 1.52 0.00 0.00 0.67 0.00 0.00 0.41 0.00 1.04 0.00 0.17 0.34 0.62 0.00 0.00 M 0.00 0.00 4.46 5.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 M 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 7.55 0.52 0.00 0.00 0.52 0.00 0.95 0.00 0.00 0.00 1.90 0.00 M 2.59 0.00 0.00 0.62 0.00 1.14 0.00 0.00 2.01 0.00 0.00 1.37 0.52 1.96 0.00 1.41 1.38 0.00 0.00 0.00 M 2.35 0.17 0.00 0.52 0.00 0.52 0.00 0.24 1.32 3.30 0.43 3.14 0.00 0.20 0.00 0.00 0.40 0.40 0.00 0.00 M 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.51 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.10 0.00 1.04 M 0.92 0.29 0.00 0.00 0.00 0.00 0.00 0.19 2.45 1.46 0.00 1.02 0.00 1.91 0.70 1.48 2.15 0.43 0.00 0.00 M 3.05 0.00 0.85 0.17 0.00 1.14 0.00 0.52 0.00 0.00 0.00 1.62 0.00 0.70 0.00 3.34 1.09 0.52 0.00 0.00 M 1.63 0.00 0.00 0.00 0.21 0.00 0.79 2.90 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 1.12 2.70 0.00 0.00 M 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.76 0.77 M 0.62 0.00 1.22 0.48 0.00 7.27 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.40 0.00 0.86 1.36 0.00 0.00 0.00 M 0.62 0.00 0.00 0.00 0.00 0.00 0.17 1.74 9.68 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 M 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 0.56 0.24 0.00 0.00 0.00 0.00 0.00 0.00 8.27 0.00 0.00 M 0.48 0.00 0.00 1.90 0.00 2.02 0.00 0.00 1.56 1.54 0.00 0.00 0.00 0.00 0.00 0.56 0.18 0.00 0.00 0.70 M 1.07 0.00 0.00 0.52 0.00 4.09 0.00 0.00 0.70 0.00 0.43 0.00 0.50 0.52 0.00 0.89 0.24 0.00 0.00 0.00 M 0.35 0.79 3.19 0.00 0.00 0.00 2.38 0.00 1.54 0.00 0.00 3.33 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 M 3.64 0.00 0.00 0.70 0.00 0.21 0.00 0.97 0.00 2.28 0.00 0.00 0.00 0.35 0.00 0.50 0.00 2.87 0.00 0.70 M 1.67 0.00 1.96 3.61 0.00 1.59 0.00 0.00 0.19 0.00 0.00 0.34 1.25 0.79 0.00 0.20 0.62 0.00 0.00 0.00 M 1.83 0.00 1.16 4.40 0.00 1.08 0.00 0.00 0.89 0.29 0.00 0.00 0.00 0.80 0.00 0.73 0.00 0.00 0.00 0.00 M 1.03 0.38 1.58 0.00 0.35 0.00 1.29 1.88 0.00 1.09 0.00 0.70 0.00 0.00 0.00 0.00 0.00 1.57 0.00 2.09 M 1.31 0.00 0.00 0.00 0.00 10.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.52 0.00 0.00 0.00 M 3.68 0.00 0.79 0.50 0.00 3.08 0.80 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.35 0.43 1.48 0.00 0.00 M 0.00 0.00 1.65 6.92 0.00 0.77 0.00 0.00 1.04 0.00 0.00 0.62 0.00 1.21 0.00 0.79 0.00 0.00 0.00 0.00 M 6.91 0.52 0.00 0.00 0.00 0.52 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.69 1.09 0.00 0.00 M 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 11.69 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 M 1.19 0.00 0.21 1.69 0.79 2.05 0.00 1.29 0.00 0.62 0.00 0.00 0.00 0.99 0.00 0.90 0.40 0.70 0.35 0.77 M 0.77 0.00 0.00 0.00 0.00 0.53 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 8.77 0.40 0.00 0.00 0.00 0.00 M 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 6.61 2.75 0.00 0.00 0.00 0.00 0.00 0.34 0.77 0.00 0.79 M 0.00 0.00 0.00 0.00 7.03 0.00 0.00 0.52 0.00 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 M 0.21 0.00 0.00 0.62 0.17 0.00 0.35 1.79 1.86 0.85 0.00 0.00 0.00 0.43 0.00 0.43 1.69 3.57 0.00 0.00 M 1.78 0.00 0.00 0.00 0.00 1.51 0.00 0.29 0.00 0.00 0.00 0.24 0.00 0.62 0.00 1.61 1.49 4.43 0.00 0.00 M 0.00 0.00 0.77 0.00 1.06 0.00 1.50 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.70 0.00 0.00 7.40 M 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 M 0.70 0.00 0.00 1.90 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.18 1.72 0.00 0.62 2.00 0.00 4.05 0.00 M 0.70 0.00 0.79 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 8.56 0.00 0.00 0.00 M 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.74 2.07 0.00 0.00 0.00 5.62 0.52 0.00 0.00 0.00 0.00 0.00 M 2.76 0.00 0.48 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 4.05 0.00 3.25 0.00 0.00 0.00 M 0.77 0.00 0.00 0.00 3.92 0.00 0.62 0.00 1.29 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 5.07 M 0.00 0.00 0.00 0.00 11.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 M 0.19 0.00 2.57 0.77 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 5.34 0.00 0.00 1.78 0.00 0.00 0.00 0.00 M 0.17 0.00 0.52 0.00 0.00 0.00 4.22 0.00 3.39 0.00 0.00 0.00 0.00 0.77 0.00 2.48 0.40 0.00 0.00 0.00 M 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 M 0.50 0.00 3.25 0.00 0.00 4.05 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.77 0.00 0.00 M 0.00 0.00 2.74 0.00 1.04 1.48 1.05 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 M 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 10.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 M 0.50 0.00 0.00 0.00 0.00 0.00 0.96 0.00 2.94 0.00 0.00 0.21 0.00 0.22 0.00 5.91 0.70 0.00 0.00 0.00 [Part of this file has been deleted for brevity] T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 11.96 0.00 1.04 0.00 0.00 0.00 0.00 T 11.96 0.00 0.00 0.00 0.00 1.04 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 12.30 0.00 0.70 0.00 0.00 0.00 0.00 T 12.30 0.00 0.00 0.00 0.00 0.00 0.70 T 12.30 0.00 0.00 0.00 0.00 0.00 0.70 T 12.30 0.00 0.00 0.00 0.00 0.00 0.70 T 12.30 0.00 0.00 0.00 0.00 0.00 0.70 T 12.30 0.00 0.00 0.00 0.00 0.00 0.70 T 12.30 0.00 0.00 0.00 0.00 0.00 0.70 T 12.30 0.00 0.00 0.00 0.00 0.00 0.70 T 10.74 0.00 1.56 0.00 0.00 0.00 0.70 T 10.74 0.00 0.00 0.00 0.00 0.70 1.56 T 11.44 0.00 0.00 0.00 0.00 1.56 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 13.00 0.00 0.00 0.00 0.00 0.00 0.00 T 12.21 0.00 0.00 0.00 0.00 0.00 0.00 T 11.69 0.00 0.00 0.00 0.00 0.00 0.00 T 11.69 0.00 0.00 0.00 0.00 0.00 0.00 T 10.92 0.00 0.00 0.00 0.00 0.00 0.00 T 9.70 0.00 0.00 0.00 0.00 0.00 0.00 |
| Program name | Description |
|---|---|
| ehmmalign | Align sequences to an HMM profile |
| ehmmbuild | Build a profile HMM from an alignment |
| ehmmcalibrate | Calibrate HMM search statistics |
| ehmmconvert | Convert between profile HMM file formats |
| ehmmemit | Generate sequences from a profile HMM |
| ehmmfetch | Retrieve an HMM from an HMM database |
| ehmmindex | Create a binary SSI index for an HMM database |
| ehmmpfam | Search one or more sequences against an HMM database |
| ehmmsearch | Search a sequence database with a profile HMM |
| libgen | Generate discriminating elements from alignments |
| ohmmalign | Align sequences with an HMM |
| ohmmcalibrate | Calibrate a hidden Markov model |
| ohmmconvert | Convert between HMM formats |
| ohmmemit | Extract HMM sequences |
| ohmmfetch | Extract HMM from a database |
| ohmmindex | Index an HMM database |
| ohmmpfam | Align single sequence with an HMM |
| ohmmsearch | Search sequence database with an HMM |
Please report all bugs to the EMBOSS bug team (emboss-bug © emboss.open-bio.org) not to the original author.