Application and EMBASSY package documentation is available for the CVS (Developers) Release and major versions of the Stable Release:
All applications are organised into logical groups according to their function.
For descriptions of the groups see Section B.2, “Application Groups (release R6)”.
An EMBASSY package groups together applications of related functionality that are kept separate from EMBOSS either for convenience or because difference licensing conditions are in effect.
For descriptions of the packages see Section B.3, “EMBASSY Packages (release R6)”.
The documentation includes usage examples, which give the command line session and example input and output files for typical uses.
See the following tables:
EMBOSS applications (Section B.4, “EMBOSS Applications (release R6)”)
EMBASSY applications (Section B.5, “EMBASSY Applications (release R6)”)
Applications organised by group (Section B.6, “All Applications (by group)”)