ajurldata

Data type AjPUrl

Holds the url itself, plus associated information.

Alias name(s)

Name
AjSUrl
AjOUrl

Attributes

Name	Type	Description
Id	AjPStr	Id of term
Db	AjPStr	Database name from input
Setdb	AjPStr	Database name from command line
Full	AjPStr	Full name
Qry	AjPStr	Query for re-reading
Formatstr	AjPStr	Input format name
Filename	AjPStr	Original filename
Lines	AjPStr*	Full text
Resqry	AjPResquery	Resource query
Fpos	ajlong	File position
Format	AjEnum	Input format enum
Count	ajuint	Number of lines read

Data type AjPUrlin

Holds the input specification and information needed to read the url and possible further entries

Alias name(s)

Name
AjSUrlin
AjOUrlin

Attributes

Name	Type	Description
Input	AjPTextin	General text input object
Resource	AjPResource	Resource object
UrlList	AjPList	Result URLs list
QryList	AjPList	Resource query objects for result URLs list
UrlData	void*	Format data for reuse, e.g. multiple term input (unused in current code)
Identifiers	AjPStr	Identifiers of source entry
Accession	AjPStr	Accession number of source entry
IdTypes	AjPStr	Identifier types in DRCAT
IsSwiss	AjBool	True if URL is from a SwissProt reference
IsEmbl	AjBool	True if URL is from an Embl/GenBank/DDBJ reference

Data type AjPUrlall

Inherits an AjPUrl but allows more URLs to be read from the same input by also inheriting the AjPUrlin input object.

Alias name(s)

Name
AjSUrlall
AjOUrlall

Attributes

Name	Type	Description
Url	AjPUrl	Current URL
Urlin	AjPUrlin	URL input for reading next
Totterms	ajulong	Count of terms so far
Count	ajuint	Count of terms so far
Multi	AjBool	True if multiple values are expected
Returned	AjBool	if true: URL object has been returned to a new owner and is not to be deleted by the destructor
Padding	char[4]	Padding to alignment boundary

Data type AjPUrlAccess

Holds information needed to read an url entry from a database. Access methods are defined for each known database type.

Url entries are read from the database using the defined database access function, which is usually a static function within ajurldb.c

This should be a static data object but is needed for the definition of AjPUrlin.

Alias name(s)

Name
AjSUrlAccess
AjOUrlAccess

Attributes

Name	Type	Description
Name	const char*	Access method name used in emboss.default
Access	(AjBool*)	Access function
AccessFree	(AjBool*)	Access cleanup function
Qlink	const char*	Supported query link operators
Desc	const char*	Description
Alias	AjBool	Alias for another name
Entry	AjBool	Supports retrieval of single entries
Query	AjBool	Supports retrieval of selected entries
All	AjBool	Supports retrieval of all entries
Chunked	AjBool	Supports retrieval of entries in chunks