ajmart
Ajax BioMart locations structure.
Holds lists of RegistryDBPointer, MartDBLocation & MartURLLocation
locations. Each list consists of string tables.
AjPMartLoc is implemented as a pointer to a C data structure.
Alias name(s)
Attributes
| Name | Type | Description |
|---|
| Registries | AjPTable* | Tables of registry entries
|
| Databases | AjPTable* | Tables of database entries
|
| Urls | AjPTable* | Tables of URL entries
|
| Reg_read | AjPList | List of registry tables used only
during XML reading and subsequently
converted to the table array above.
|
| Data_read | AjPList | List of database tables (see Reg_read)
|
| Url_read | AjPList | List of URL tables (see Reg_read)
|
| Nregistries | ajuint | Number of registry entries
|
| Ndatabases | ajuint | Number of database entries
|
| Nurls | ajuint | Number of url entries
|
| Depth | ajuint | Depth of XML when reading
|
Ajax BioMart dataset information
AjPMartDataset is implemented as a pointer to a C data structure.
Alias name(s)
Attributes
| Name | Type | Description |
|---|
| Sets | AjPTable* | Datasets
|
| Set_read | AjPList | List used for XML / tab-sep processing
|
| Nsets | ajuint | Number of datasets
|
| Depth | ajuint | Depth for XML processing
|
Ajax BioMart attribute information
AjPMartAttribute is implemented as a pointer to a C data structure.
Alias name(s)
Attributes
| Name | Type | Description |
|---|
| Attributes | AjPTable* | Attributes
|
| Att_read | AjPList | List used for XML / tab-sep processing
|
| Natts | ajuint | Number of attributes
|
| Depth | ajuint | Depth for XML processing
|
Ajax BioMart filter information
AjPMartFilter is implemented as a pointer to a C data structure.
Alias name(s)
Attributes
| Name | Type | Description |
|---|
| Filters | AjPTable* | Filterss
|
| Filter_read | AjPList | List used for XML / tab-sep processing
|
| Nfilters | ajuint | Number of filters
|
| Depth | ajuint | Depth for XML processing
|
Biomart martservice object for holding query dataset info pre conversion
to an XML query string
Alias name(s)
Attributes
| Name | Type | Description |
|---|
| Name | AjPStr | Name of dataset
|
| Interface | AjPStr | Interface of dataset
|
| Attributes | AjPList | Attributes
|
| Filters | AjPList | Filters
|
Biomart martservice object for holding query info pre conversion
to an XML query string
Alias name(s)
Attributes
| Name | Type | Description |
|---|
| Hvirtualschema | AjPStr | Header virtualSchemaName
|
| Hversion | AjPStr | Header datasetConfigVersion
|
| Hformatter | AjPStr | Header output formatter type
|
| Hcount | AjBool | Header count
|
| Hheader | AjBool | Header flag for printing column names
|
| Hstamp | AjBool | Header flag for completionStamp
|
| Hunique | AjBool | Header flag for unique rows
|
| Dsets | AjPMartdsinfo* | Mart attributes
|
| Dnsets | ajuint | Number of datasets
|
| Verify | AjBool | Check attnames and filtnames
|
Biomart martservice query object
Alias name(s)
Attributes