ajdas

Data type AjPDasCoordinate

Attributes

Name	Type	Description
uri	AjPStr	the unique URI for a DAS source. For a DAS registration server it should allow to access more information about the coordinate/namespace
taxid	AjPStr	NCBI taxonomy id of the organism, as a number
source	AjPStr	type of the sources for the coordinate system, such as chromosome, scaffold, supercontig
authority	AjPStr	name of the organization that determined the coordinate system
test_range	AjPStr	example id with start/stop positions
version	AjPStr	version of the build upon which the coordinate system is based

Data type AjPDasSource

Attributes

Name	Type	Description
uri	AjPStr	a unique URI for the DAS source
title	AjPStr	nickname
description	AjPStr	description
entry_points_uri	AjPStr	URI for the DAS 'entry_points' command
sequence_query_uri	AjPStr	URI for the DAS 'sequence' command
features_query_uri	AjPStr	URI for the DAS 'features' command
coordinates	AjPList	list of supported coordinates
sequence	AjBool	whether 'sequence' queries are supported
stylesheet	AjBool	whether 'stylesheet' queries are supported
features	AjBool	whether 'features' queries are supported
entry_points	AjBool	whether 'entry_points' queries are supported

Data type AjPDasSegment

segment elements are returned by DAS 'entry_points' query

Attributes

Name	Type	Description
id	AjPStr	unique identifier
type	AjPStr	type of the segment, such as "chromosome" or "scaffold"
start	ajuint	start position of the segment
stop	ajuint	stop position of the segment
orientation	AjPStr	orientation is one of "+" or "-" and indicates the strandedness of the segment ("+" if the segment is not intrinsically ordered)
subparts	AjBool	"yes" indicates that the segment has subparts
padding	char[4]	Padding to alignment boundary

Data type AjDASserver

Attributes

Name	Type	Description
host	AjPStr	host-name
path	AjPStr	path to DAS service on host
port	ajuint	URL port
padding	char[4]	Padding to alignment boundary
sources	AjPList	list of available DAS sources on the server