ajassemdata

Data type AjPAssem

Holds the assembly itself, plus associated information.

Alias name(s)

Name
AjSAssem
AjOAssem

Attributes

Name	Type	Description
Id	AjPStr	Id of term
Db	AjPStr	Database name from input
Setdb	AjPStr	Database name from command line
Full	AjPStr	Full name
Qry	AjPStr	Query for re-reading
Formatstr	AjPStr	Input format name
Filename	AjPStr	Original filename
Textptr	AjPStr	Full text
Fpos	ajlong	File position
Format	AjEnum	Input format enum
Count	ajuint	Number of lines read

Data type AjPAssemin

Holds the input specification and information needed to read the assembly and possible further entries

Alias name(s)

Name
AjSAssemin
AjOAssemin

Attributes

Name	Type	Description
Input	AjPTextin	General text input object
AssemData	void*	Format data for reuse, e.g. multiple term input (unused in current code)

Data type AjPAssemAccess

Holds information needed to read an assembly entry from a database. Access methods are defined for each known database type.

Assembly entries are read from the database using the defined database access function, which is usually a static function within ajassemdb.c

This should be a static data object but is needed for the definition of AjPAssemin.

Alias name(s)

Name
AjSAssemAccess
AjOAssemAccess

Attributes

Name	Type	Description
Name	const char*	Access method name used in emboss.default
Access	(AjBool*)	Access function
AccessFree	(AjBool*)	Access cleanup function
Qlink	const char*	Supported query link operators
Desc	const char*	Description
Alias	AjBool	Alias for another name
Entry	AjBool	Supports retrieval of single entries
Query	AjBool	Supports retrieval of selected entries
All	AjBool	Supports retrieval of all entries
Chunked	AjBool	Supports retrieval of entries in chunks