ajseqread.c
All constructors return a new sequence input object by pointer. It
is the responsibility of the user to first destroy any previous
sequence input object. The target pointer does not need to be
initialised to NULL, but it is good programming practice to do so
anyway.
Functions: ajSeqinNew
Creates a new sequence input object.
Synopsis
Prototype
AjPSeqin ajSeqinNew (
void
);
Type | Name | Read/Write | Description |
AjPSeqin | | RETURN | New sequence input object. |
Returns
AjPSeqin: | New sequence input object. |
Description
Creates a new sequence input object.
See Also
See other functions in this section
Availability
In release 6.4.0
Destruction destroys all internal data structures and frees the
memory allocated for the sequence input object.
Functions: ajSeqinDel
Deletes a sequence input object.
Synopsis
Prototype
void ajSeqinDel (
AjPSeqin* pthis
);
Type | Name | Read/Write | Description |
AjPSeqin* | pthis | Delete | Sequence input |
void | | RETURN | |
Output
pthis: | (Delete) | Sequence input |
Returns
Description
Deletes a sequence input object.
See Also
See other functions in this section
Availability
In release 6.4.0
These functions use the contents of a sequence input object and
update them.
Functions: ajSeqinUsa ajSeqinSetNuc ajSeqinSetProt ajSeqinSetRange
Creates or resets a sequence input object using a new Universal
Sequence Address
Synopsis
Prototype
void ajSeqinUsa (
AjPSeqin* pthis,
const AjPStr Usa
);
Type | Name | Read/Write | Description |
AjPSeqin* | pthis | Modify | Sequence input object. |
const AjPStr | Usa | Input | USA |
void | | RETURN | |
Input
Input & Output
pthis: | (Modify) | Sequence input object. |
Returns
Description
Creates or resets a sequence input object using a new Universal
Sequence Address
See Also
See other functions in this section
Availability
In release 6.4.0
Sets the type to be forced as nucleic for a sequence input object
Synopsis
Prototype
void ajSeqinSetNuc (
AjPSeqin seqin
);
Type | Name | Read/Write | Description |
AjPSeqin | seqin | Modify | Sequence input object to be set. |
void | | RETURN | |
Input & Output
seqin: | (Modify) | Sequence input object to be set. |
Returns
Description
Sets the type to be forced as nucleic for a sequence input object
See Also
See other functions in this section
Availability
In release 6.4.0
Sets the type to be forced as protein for a sequence input object
Synopsis
Prototype
void ajSeqinSetProt (
AjPSeqin seqin
);
Type | Name | Read/Write | Description |
AjPSeqin | seqin | Modify | Sequence input object to be set. |
void | | RETURN | |
Input & Output
seqin: | (Modify) | Sequence input object to be set. |
Returns
Description
Sets the type to be forced as protein for a sequence input object
See Also
See other functions in this section
Availability
In release 6.4.0
Sets the start and end positions for a sequence input object
Synopsis
Prototype
void ajSeqinSetRange (
AjPSeqin seqin,
ajint ibegin,
ajint iend
);
Type | Name | Read/Write | Description |
AjPSeqin | seqin | Modify | Sequence input object to be set. |
ajint | ibegin | Input | Start position. Negative values are from the end. |
ajint | iend | Input | End position. Negative values are from the end. |
void | | RETURN | |
Input
ibegin: | (Input) | Start position. Negative values are from the end. |
iend: | (Input) | End position. Negative values are from the end. |
Input & Output
seqin: | (Modify) | Sequence input object to be set. |
Returns
Description
Sets the start and end positions for a sequence input object
See Also
See other functions in this section
Availability
In release 6.4.0
These functions use the contents of a sequence input object but do
not make any changes.
Functions: ajSeqAllRead ajSeqallFile ajSeqallNext ajSeqinClearPos ajSeqinClear
Parse a USA Uniform Sequence Address into format, access, file and entry
Split at delimiters. Check for the first part as a valid format
Check for the remaining first part as a database name or as a file
that can be opened.
Anything left is an entryname spec.
Return the results in the AjPSeq object but leave the file open for
future calls.
Synopsis
Prototype
AjBool ajSeqAllRead (
AjPSeq thys,
AjPSeqin seqin
);
Type | Name | Read/Write | Description |
AjPSeq | thys | Output | Sequence returned. |
AjPSeqin | seqin | Modify | Sequence input definitions |
AjBool | | RETURN | ajTrue on success. |
Output
thys: | (Output) | Sequence returned. |
Input & Output
seqin: | (Modify) | Sequence input definitions |
Returns
AjBool: | ajTrue on success. |
Description
Parse a USA Uniform Sequence Address into format, access, file and entry
Split at delimiters. Check for the first part as a valid format
Check for the remaining first part as a database name or as a file
that can be opened.
Anything left is an entryname spec.
Return the results in the AjPSeq object but leave the file open for
future calls.
See Also
See other functions in this section
Availability
In release 6.4.0
Parse a USA Uniform Sequence Address
Return the results in the AjPSeqall object but leave the file open for
future calls.
Synopsis
Prototype
AjPSeqall ajSeqallFile (
const AjPStr usa
);
Type | Name | Read/Write | Description |
const AjPStr | usa | Input | sequence usa. |
AjPSeqall | | RETURN | seqall object |
Input
Returns
Description
Parse a USA Uniform Sequence Address
Return the results in the AjPSeqall object but leave the file open for
future calls.
See Also
See other functions in this section
Availability
In release 6.4.0
Reads the next sequence into a sequence stream. For the first call this
simply returns the sequence already loaded. For later calls a new
sequence is read.
Synopsis
Prototype
AjBool ajSeqallNext (
AjPSeqall seqall,
AjPSeq* retseq
);
Type | Name | Read/Write | Description |
AjPSeqall | seqall | Modify | Sequence stream |
AjPSeq* | retseq | Output | Sequence |
AjBool | | RETURN | ajTrue if a sequence was refound. ajFalse when all is done. |
Output
Input & Output
seqall: | (Modify) | Sequence stream |
Returns
AjBool: | ajTrue if a sequence was refound. ajFalse when all is done. |
Description
Reads the next sequence into a sequence stream. For the first call this
simply returns the sequence already loaded. For later calls a new
sequence is read.
See Also
See other functions in this section
Availability
In release 6.4.0
Clears a Sequence input object position information as possibly read from
a USA that included the begin, end and direction
Synopsis
Prototype
void ajSeqinClearPos (
AjPSeqin thys
);
Type | Name | Read/Write | Description |
AjPSeqin | thys | Modify | Sequence input |
void | | RETURN | |
Input & Output
thys: | (Modify) | Sequence input |
Returns
Description
Clears a Sequence input object position information as possibly read from
a USA that included the begin, end and direction
See Also
See other functions in this section
Availability
In release 6.4.0
Clears a Sequence input object back to "as new" condition, except
for the USA list and the features setting which must be preserved.
Synopsis
Prototype
void ajSeqinClear (
AjPSeqin thys
);
Type | Name | Read/Write | Description |
AjPSeqin | thys | Output | Sequence input |
void | | RETURN | |
Output
thys: | (Output) | Sequence input |
Returns
Description
Clears a Sequence input object back to "as new" condition, except
for the USA list and the features setting which must be preserved.
See Also
See other functions in this section
Availability
In release 6.4.0
These functions read the sequence provided by the first argument
Functions: ajSeqRead
If the file is not yet open, calls seqinUsaProcess to convert the USA into
an open file stream.
Uses seqRead for the actual file reading.
Returns the results in the AjPSeq object.
Synopsis
Prototype
AjBool ajSeqRead (
AjPSeq thys,
AjPSeqin seqin
);
Type | Name | Read/Write | Description |
AjPSeq | thys | Output | Sequence returned. |
AjPSeqin | seqin | Modify | Sequence input definitions |
AjBool | | RETURN | ajTrue on success. |
Output
thys: | (Output) | Sequence returned. |
Input & Output
seqin: | (Modify) | Sequence input definitions |
Returns
AjBool: | ajTrue on success. |
Description
If the file is not yet open, calls seqinUsaProcess to convert the USA into
an open file stream.
Uses seqRead for the actual file reading.
Returns the results in the AjPSeq object.
See Also
See other functions in this section
Availability
In release 6.4.0
These functions read the sequence set object provided as the
first argument.
Functions: ajSeqsetRead ajSeqsetallRead ajSeqsetFromList ajSeqsetFromPair ajSeqsetApp ajSeqPrintInFormat ajSeqPrintbookInFormat ajSeqPrinthtmlInFormat ajSeqPrintwikiInFormat ajSeqFormatTest ajSeqUsaGetBase
Parse a USA Uniform Sequence Address into format, access, file and entry
Split at delimiters. Check for the first part as a valid format
Check for the remaining first part as a database name or as a file
that can be opened.
Anything left is an entryname spec.
Read all the sequences until done
Return the results in the AjPSeqset object.
Synopsis
Prototype
AjBool ajSeqsetRead (
AjPSeqset thys,
AjPSeqin seqin
);
Type | Name | Read/Write | Description |
AjPSeqset | thys | Output | Sequence set returned. |
AjPSeqin | seqin | Modify | Sequence input definitions |
AjBool | | RETURN | ajTrue on success. |
Output
thys: | (Output) | Sequence set returned. |
Input & Output
seqin: | (Modify) | Sequence input definitions |
Returns
AjBool: | ajTrue on success. |
Description
Parse a USA Uniform Sequence Address into format, access, file and entry
Split at delimiters. Check for the first part as a valid format
Check for the remaining first part as a database name or as a file
that can be opened.
Anything left is an entryname spec.
Read all the sequences until done
Return the results in the AjPSeqset object.
See Also
See other functions in this section
Availability
In release 6.4.0
Parse a USA Uniform Sequence Address into format, access, file and entry
Split at delimiters. Check for the first part as a valid format
Check for the remaining first part as a database name or as a file
that can be opened.
Anything left is an entryname spec.
Read all the sequences into sequence sets until done
Start a new set for each multiple sequence input
Return the results in the AjPList object with AjPSeqset nodes
Synopsis
Prototype
AjBool ajSeqsetallRead (
AjPList thys,
AjPSeqin seqin
);
Type | Name | Read/Write | Description |
AjPList | thys | Output | List of sequence sets returned. |
AjPSeqin | seqin | Modify | Sequence input definitions |
AjBool | | RETURN | ajTrue on success. |
Output
thys: | (Output) | List of sequence sets returned. |
Input & Output
seqin: | (Modify) | Sequence input definitions |
Returns
AjBool: | ajTrue on success. |
Description
Parse a USA Uniform Sequence Address into format, access, file and entry
Split at delimiters. Check for the first part as a valid format
Check for the remaining first part as a database name or as a file
that can be opened.
Anything left is an entryname spec.
Read all the sequences into sequence sets until done
Start a new set for each multiple sequence input
Return the results in the AjPList object with AjPSeqset nodes
See Also
See other functions in this section
Availability
In release 6.4.0
Builds a sequence set from a list of sequences
Synopsis
Prototype
ajint ajSeqsetFromList (
AjPSeqset thys,
const AjPList list
);
Type | Name | Read/Write | Description |
AjPSeqset | thys | Output | Sequence set |
const AjPList | list | Input | List of sequence objects |
ajint | | RETURN | Number of sequences in the set. |
Input
list: | (Input) | List of sequence objects |
Output
thys: | (Output) | Sequence set |
Returns
ajint: | Number of sequences in the set. |
Description
Builds a sequence set from a list of sequences
See Also
See other functions in this section
Availability
In release 6.4.0
Builds a sequence set from a pair of sequences
Synopsis
Prototype
ajint ajSeqsetFromPair (
AjPSeqset thys,
const AjPSeq seqa,
const AjPSeq seqb
);
Type | Name | Read/Write | Description |
AjPSeqset | thys | Output | Sequence set |
const AjPSeq | seqa | Input | Sequence 1 |
const AjPSeq | seqb | Input | Sequence 2 |
ajint | | RETURN | Number of sequences in the set. |
Input
seqa: | (Input) | Sequence 1 |
seqb: | (Input) | Sequence 2 |
Output
thys: | (Output) | Sequence set |
Returns
ajint: | Number of sequences in the set. |
Description
Builds a sequence set from a pair of sequences
See Also
See other functions in this section
Availability
In release 6.4.0
Adds a sequence to a sequence set
Synopsis
Prototype
ajint ajSeqsetApp (
AjPSeqset thys,
const AjPSeq seq
);
Type | Name | Read/Write | Description |
AjPSeqset | thys | Output | Sequence set |
const AjPSeq | seq | Input | Sequence |
ajint | | RETURN | Number of sequences in the set. |
Input
Output
thys: | (Output) | Sequence set |
Returns
ajint: | Number of sequences in the set. |
Description
Adds a sequence to a sequence set
See Also
See other functions in this section
Availability
In release 6.4.0
Reports the internal data structures
Synopsis
Prototype
void ajSeqPrintInFormat (
AjPFile outf,
AjBool full
);
Type | Name | Read/Write | Description |
AjPFile | outf | Modify | Output file |
AjBool | full | Input | Full report (usually ajFalse) |
void | | RETURN | |
Input
full: | (Input) | Full report (usually ajFalse) |
Input & Output
Returns
Description
Reports the internal data structures
See Also
See other functions in this section
Availability
In release 6.4.0
Reports the internal data structures as a Docbook table
Synopsis
Prototype
void ajSeqPrintbookInFormat (
AjPFile outf
);
Type | Name | Read/Write | Description |
AjPFile | outf | Modify | Output file |
void | | RETURN | |
Input & Output
Returns
Description
Reports the internal data structures as a Docbook table
See Also
See other functions in this section
Availability
In release 6.4.0
Reports the internal data structures as an HTML table
Synopsis
Prototype
void ajSeqPrinthtmlInFormat (
AjPFile outf
);
Type | Name | Read/Write | Description |
AjPFile | outf | Modify | Output file |
void | | RETURN | |
Input & Output
Returns
Description
Reports the internal data structures as an HTML table
See Also
See other functions in this section
Availability
In release 6.4.0
Reports the internal data structures as a wiki table
Synopsis
Prototype
void ajSeqPrintwikiInFormat (
AjPFile outf
);
Type | Name | Read/Write | Description |
AjPFile | outf | Modify | Output file |
void | | RETURN | |
Input & Output
Returns
Description
Reports the internal data structures as a wiki table
See Also
See other functions in this section
Availability
In release 6.4.0
tests whether a named format is known
Synopsis
Prototype
AjBool ajSeqFormatTest (
const AjPStr format
);
Type | Name | Read/Write | Description |
const AjPStr | format | Input | Format |
AjBool | | RETURN | ajTrue if formats was accepted |
Input
Returns
AjBool: | ajTrue if formats was accepted |
Description
tests whether a named format is known
See Also
See other functions in this section
Availability
In release 6.4.0
Extracts the base part from a USA, suitable for use in fetching other
sequences from the same source
Synopsis
Prototype
AjBool ajSeqUsaGetBase (
const AjPStr usa,
AjPStr* Pbaseusa
);
Type | Name | Read/Write | Description |
const AjPStr | usa | Input | Original USA |
AjPStr* | Pbaseusa | Modify | Base part of USA |
AjBool | | RETURN | True on success |
Input
Input & Output
Pbaseusa: | (Modify) | Base part of USA |
Returns
Description
Extracts the base part from a USA, suitable for use in fetching other
sequences from the same source
See Also
See other functions in this section
Availability
In release 6.4.0
These functions use the contents of a sequence query object but do
not make any changes.
Functions: ajSeqParseFasta ajSeqParseNcbi ajSeqParseFastq ajSeqGetFromUsaRange ajSeqGetFromUsa ajSeqsetGetFromUsa ajSeqReadExit
Parse an NCBI format fasta line. Return id acc sv and description
Synopsis
Prototype
AjBool ajSeqParseFasta (
const AjPStr instr,
AjPStr* id,
AjPStr* acc,
AjPStr* sv,
AjPStr* desc
);
Type | Name | Read/Write | Description |
const AjPStr | instr | Input | fasta line. |
AjPStr* | id | Output | id. |
AjPStr* | acc | Output | accession number. |
AjPStr* | sv | Output | sequence version number. |
AjPStr* | desc | Output | description. |
AjBool | | RETURN | ajTrue if fasta format |
Input
Output
id: | (Output) | id. |
acc: | (Output) | accession number. |
sv: | (Output) | sequence version number. |
desc: | (Output) | description. |
Returns
AjBool: | ajTrue if fasta format |
Description
Parse an NCBI format fasta line. Return id acc sv and description
See Also
See other functions in this section
Availability
In release 6.4.0
Parse an NCBI format fasta line. Return id acc and description.
Tries to cope with the amazing variety of identifiers NCBI inflicts
on us all - see the BLAST document README.formatdb from NCBI for
some of the gory detail, and look at some real files for clues
to what can really happen. Sadly,'real files' also includes
internal IDs in blast databases reformatted by formatdb.
Synopsis
Prototype
AjBool ajSeqParseNcbi (
const AjPStr instr,
AjPStr* id,
AjPStr* acc,
AjPStr* sv,
AjPStr* gi,
AjPStr* db,
AjPStr* desc
);
Type | Name | Read/Write | Description |
const AjPStr | instr | Input | fasta line. |
AjPStr* | id | Output | id. |
AjPStr* | acc | Output | accession number. |
AjPStr* | sv | Output | sequence version number. |
AjPStr* | gi | Output | GI version number. |
AjPStr* | db | Output | NCBI database name |
AjPStr* | desc | Output | description. |
AjBool | | RETURN | ajTrue if ncbi format |
Input
Output
id: | (Output) | id. |
acc: | (Output) | accession number. |
sv: | (Output) | sequence version number. |
gi: | (Output) | GI version number. |
db: | (Output) | NCBI database name |
desc: | (Output) | description. |
Returns
AjBool: | ajTrue if ncbi format |
Description
Parse an NCBI format fasta line. Return id acc and description.
Tries to cope with the amazing variety of identifiers NCBI inflicts
on us all - see the BLAST document README.formatdb from NCBI for
some of the gory detail, and look at some real files for clues
to what can really happen. Sadly,'real files' also includes
internal IDs in blast databases reformatted by formatdb.
See Also
See other functions in this section
Availability
In release 6.4.0
Parse a fastq id line. Return id acc sv and description
Synopsis
Prototype
AjBool ajSeqParseFastq (
const AjPStr instr,
AjPStr* id,
AjPStr* desc
);
Type | Name | Read/Write | Description |
const AjPStr | instr | Input | fastq line. |
AjPStr* | id | Output | id. |
AjPStr* | desc | Output | description. |
AjBool | | RETURN | ajTrue if fastq format |
Input
Output
id: | (Output) | id. |
desc: | (Output) | description. |
Returns
AjBool: | ajTrue if fastq format |
Description
Parse a fastq id line. Return id acc sv and description
See Also
See other functions in this section
Availability
In release 6.4.0
Returns a sequence given a USA
Synopsis
Prototype
AjBool ajSeqGetFromUsaRange (
const AjPStr thys,
AjBool protein,
ajint ibegin,
ajint iend,
AjPSeq seq
);
Type | Name | Read/Write | Description |
const AjPStr | thys | Input | USA |
AjBool | protein | Input | True if protein |
ajint | ibegin | Input | sequence start position |
ajint | iend | Input | sequence end position |
AjPSeq | seq | Modify | sequence |
AjBool | | RETURN | ajTrue on success |
Input
thys: | (Input) | USA |
protein: | (Input) | True if protein |
ibegin: | (Input) | sequence start position |
iend: | (Input) | sequence end position |
Input & Output
Returns
Description
Returns a sequence given a USA
See Also
See other functions in this section
Availability
In release 6.4.0
Returns a sequence given a USA
Synopsis
Prototype
AjBool ajSeqGetFromUsa (
const AjPStr thys,
AjBool protein,
AjPSeq seq
);
Type | Name | Read/Write | Description |
const AjPStr | thys | Input | USA |
AjBool | protein | Input | True if protein |
AjPSeq | seq | Modify | sequence |
AjBool | | RETURN | ajTrue on success |
Input
thys: | (Input) | USA |
protein: | (Input) | True if protein |
Input & Output
Returns
Description
Returns a sequence given a USA
See Also
See other functions in this section
Availability
In release 6.4.0
Return a seqset given a usa
Synopsis
Prototype
AjBool ajSeqsetGetFromUsa (
const AjPStr thys,
AjPSeqset* seq
);
Type | Name | Read/Write | Description |
const AjPStr | thys | Input | usa |
AjPSeqset* | seq | Output | seqset |
AjBool | | RETURN | ajTrue on success |
Input
Output
Returns
Description
Return a seqset given a usa
See Also
See other functions in this section
Availability
In release 6.4.0
Cleans up sequence reading internal memory
Synopsis
Prototype
void ajSeqReadExit (
void
);
Type | Name | Read/Write | Description |
void | | RETURN | |
Returns
Description
Cleans up sequence reading internal memory
See Also
See other functions in this section
Availability
In release 6.4.0
Functions to return internal values
Functions: ajSeqinTypeGetFields ajSeqinTypeGetQlinks ajSeqinTrace ajSeqaccessGetDb ajSeqaccessMethodGetQlinks ajSeqaccessMethodGetScope ajSeqaccessMethodTest ajSeqinformatTerm ajSeqinformatTest
Returns the listof known field names for ajSeqinRead
Synopsis
Prototype
const char* ajSeqinTypeGetFields (
void
);
Type | Name | Read/Write | Description |
const char* | | RETURN | List of field names |
Returns
const char*: | List of field names |
Description
Returns the listof known field names for ajSeqinRead
See Also
See other functions in this section
Availability
In release 6.4.0
Returns the listof known query link operators for ajSeqRead
Synopsis
Prototype
const char* ajSeqinTypeGetQlinks (
void
);
Type | Name | Read/Write | Description |
const char* | | RETURN | List of field names |
Returns
const char*: | List of field names |
Description
Returns the listof known query link operators for ajSeqRead
See Also
See other functions in this section
Availability
In release 6.4.0
Debug calls to trace the data in a sequence input object.
Synopsis
Prototype
void ajSeqinTrace (
const AjPSeqin thys
);
Type | Name | Read/Write | Description |
const AjPSeqin | thys | Input | Sequence input object. |
void | | RETURN | |
Input
thys: | (Input) | Sequence input object. |
Returns
Description
Debug calls to trace the data in a sequence input object.
See Also
See other functions in this section
Availability
In release 6.4.0
returns the table in which sequence database access details are registered
Synopsis
Prototype
AjPTable ajSeqaccessGetDb (
void
);
Type | Name | Read/Write | Description |
AjPTable | | RETURN | Access functions hash table |
Returns
AjPTable: | Access functions hash table |
Description
returns the table in which sequence database access details are registered
See Also
See other functions in this section
Availability
In release 6.4.0
Tests for a named method for sequence reading and returns the
known query link operators
Synopsis
Prototype
const char* ajSeqaccessMethodGetQlinks (
const AjPStr method
);
Type | Name | Read/Write | Description |
const AjPStr | method | Input | Method required. |
const char* | | RETURN | Known link operators |
Input
method: | (Input) | Method required. |
Returns
const char*: | Known link operators |
Description
Tests for a named method for sequence reading and returns the
known query link operators
See Also
See other functions in this section
Availability
In release 6.4.0
Tests for a named method for sequence reading and returns the scope
(entry, query or all).
Synopsis
Prototype
ajuint ajSeqaccessMethodGetScope (
const AjPStr method
);
Type | Name | Read/Write | Description |
const AjPStr | method | Input | Method required. |
ajuint | | RETURN | Scope flags |
Input
method: | (Input) | Method required. |
Returns
Description
Tests for a named method for sequence reading and returns the scope
(entry, query or all).
See Also
See other functions in this section
Availability
In release 6.4.0
Tests for a named method for sequence reading.
Synopsis
Prototype
AjBool ajSeqaccessMethodTest (
const AjPStr method
);
Type | Name | Read/Write | Description |
const AjPStr | method | Input | Method required. |
AjBool | | RETURN | ajTrue on success. |
Input
method: | (Input) | Method required. |
Returns
AjBool: | ajTrue on success. |
Description
Tests for a named method for sequence reading.
See Also
See other functions in this section
Availability
In release 6.4.0
Tests whether a data input format termis known
Synopsis
Prototype
AjBool ajSeqinformatTerm (
const AjPStr term
);
Type | Name | Read/Write | Description |
const AjPStr | term | Input | Format term EDAM ID |
AjBool | | RETURN | ajTrue if term was accepted |
Input
term: | (Input) | Format term EDAM ID |
Returns
AjBool: | ajTrue if term was accepted |
Description
Tests whether a data input format termis known
See Also
See other functions in this section
Availability
In release 6.4.0
Tests whether a named sequence data input format is known
Synopsis
Prototype
AjBool ajSeqinformatTest (
const AjPStr format
);
Type | Name | Read/Write | Description |
const AjPStr | format | Input | Format |
AjBool | | RETURN | ajTrue if formats was accepted |
Input
Returns
AjBool: | ajTrue if formats was accepted |
Description
Tests whether a named sequence data input format is known
See Also
See other functions in this section
Availability
In release 6.4.0