eseqboot |
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5 6 Alpha AACAAC Beta AACCCC Gamma ACCAAC Delta CCACCA Epsilon CCAAAC
% eseqboot test Bootstrapped sequences algorithm Output file [eseqboot.outfile]: stdout Random number seed (must be odd) [3]: 4331 Method Seq : Molecular sequences Mor : Discrete Morphology Res : Restriction Sites Gen : Gene Frequencies Choose the method [Seq]: test Boot : Bootstrap Jack : Delete-half Jackknife Perm : Permute species for each character Choose test [Boot]: How many replicates [100]: 10 5 6 Alpha ACCCAC Beta ACCCCC Gamma CCCCAC Delta CAAACA Epsilon CAAAAC 5 6 Alpha AAAACC Beta AACCCC Gamma ACAACC Delta CCCCAA Epsilon CCAACC 5 6 Alpha AAAAAC Beta AACCCC Gamma CCAAAC Delta CCCCCA Epsilon CCAAAC 5 6 Alpha AAAAAA Beta AACCCC Gamma ACAAAA Delta CCCCCC Epsilon CCAAAA 5 6 Alpha ACCCAA Beta ACCCCC Gamma CCCCAA Delta CAAACC Epsilon CAAAAA 5 6 Alpha AAACCC Beta AAACCC Gamma AACCCC Delta CCCAAA Epsilon CCCACC 5 6 Alpha AACAAC Beta AACCCC Gamma ACCAAC Delta CCACCA Epsilon CCAAAC 5 6 Alpha ACCCAA Beta ACCCCC Gamma ACCCAA Delta CAAACC Epsilon CAAAAA 5 6 Alpha AACACC Beta AACCCC Gamma ACCACC Delta CCACAA Epsilon CCAACC 5 6 Alpha AAAACA Beta AAAACC Gamma AAAACA Delta CCCCAC Epsilon CCCCAA
Mandatory qualifiers: [-datafile] infile Input file [-outfile] outfile Output file name -randseed integer Random number seed (must be odd) -method list Choose the method -test list Choose test -reps integer How many replicates Optional qualifiers (* if not always prompted): -inter bool Interleaved input * -enzymes bool Present in input file * -all bool All alleles present at each locus -printdata bool Print out the data at start of run -progress bool Print indications of progress of run Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
[-datafile] (Parameter 1) |
Input file | Input file | Required | ||||||||
[-outfile] (Parameter 2) |
Output file name | Output file | eseqboot.outfile | ||||||||
-randseed | Random number seed (must be odd) | Any integer value | 3 | ||||||||
-method | Choose the method |
|
Seq | ||||||||
-test | Choose test |
|
Boot | ||||||||
-reps | How many replicates | Integer 1 or more | 100 | ||||||||
Optional qualifiers | Allowed values | Default | |||||||||
-inter | Interleaved input | Yes/No | No | ||||||||
-enzymes | Present in input file | Yes/No | No | ||||||||
-all | All alleles present at each locus | Yes/No | No | ||||||||
-printdata | Print out the data at start of run | Yes/No | No | ||||||||
-progress | Print indications of progress of run | Yes/No | No | ||||||||
Advanced qualifiers | Allowed values | Default | |||||||||
(none) |
This application was modified for inclusion in EMBOSS by Ian Longden (il@sanger.ac.uk) Informatics Division, The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.