econtrast |
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5 2 Homo 4.09434 4.74493 Pongo 3.61092 3.33220 Macaca 2.37024 3.36730 Ateles 2.02815 2.89037 Galago -1.46968 2.30259 and the tree input file of ((((Homo:0.21,Pongo:0.21):0.28,Macaca:0.49):0.13,Ateles:0.62):0.38,Galago:1.00);
% econtrast test tree.test Continuous character Contrasts Output file [econtrast.outfile]: stdout Contrasts (columns are different characters) --------- -------- --- --------- ----------- 0.74593 2.17989 1.58474 0.71761 1.19293 0.86790 3.35832 0.89706 Covariance matrix ---------- ------ 3.9423 1.7028 1.7028 1.7062 Regressions (columns on rows) ----------- -------- -- ----- 1.0000 0.4319 0.9980 1.0000 Correlations ------------ 1.0000 0.6566 0.6566 1.0000
Mandatory qualifiers (* if not always prompted): [-infile] infile input file [-treefile] infile input tree file [-outfile] outfile Output file name * -datasets integer How many data sets Optional qualifiers: -[no]corplusreg bool Print out correlations and regressions -multsets bool Analyze multiple data sets -printdata bool Print out the data at start of run -progress bool Print indications of progress of run Advanced qualifiers: (none) |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-infile] (Parameter 1) |
input file | Input file | Required |
[-treefile] (Parameter 2) |
input tree file | Input file | Required |
[-outfile] (Parameter 3) |
Output file name | Output file | econtrast.outfile |
-datasets | How many data sets | Integer 1 or more | 1 |
Optional qualifiers | Allowed values | Default | |
-[no]corplusreg | Print out correlations and regressions | Yes/No | Yes |
-multsets | Analyze multiple data sets | Yes/No | No |
-printdata | Print out the data at start of run | Yes/No | No |
-progress | Print indications of progress of run | Yes/No | No |
Advanced qualifiers | Allowed values | Default | |
(none) |
This application was modified for inclusion in EMBOSS by Ian Longden (il@sanger.ac.uk) Informatics Division, The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.