EMBASSY Applications
Contents
- CBSTOOLS
- CLUSTALOMEGA
- DOMAINATRIX
- DOMALIGN
- DOMSEARCH
- EMNU
- ESIM4
- HMMERNEW
- IPRSCAN
- MEMENEW
- MIRA
- MSE
- MYEMBOSS
- MYEMBOSSDEMO
- PHYLIPNEW
- SIGNATURE
- STRUCTURE
- TOPO
- VIENNA
- VIENNA2
CBSTOOLS
Application details and documentation for CBSTOOLS
CBSTOOLS is available as release 1.0.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file CBSTOOLS-1.0.0.tar.gz
CLUSTALOMEGA
Application details and documentation for CLUSTALOMEGA
CLUSTALOMEGA is available as release 1.0.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file CLUSTALOMEGA-1.0.0.tar.gz
DOMAINATRIX
Previous distributions of the protein domain programs from Jon Ison's group were in a single EMBASSY package. This is now split into 5 packages according to function.
Application details and documentation for DOMAINATRIX
DOMAINATRIX is available as a Beta release 0.1.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMAINATRIX-0.1.0.tar.gz
Application details and documentation for DOMALIGN
DOMALIGN is available as a Beta release 0.1.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMALIGN-0.1.0.tar.gz
Application details and documentation for DOMSEARCH
DOMSEARCH is available as a Beta release 0.1.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMSEARCH-0.1.0.tar.gz
Application details and documentation for SIGNATURE
SIGNATURE is available as a Beta release 0.1.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file SIGNATURE-0.1.0.tar.gz
Application details and documentation for STRUCTURE
STRUCTURE is available as a Beta release 0.1.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file STRUCTURE-0.1.0.tar.gz
EMNU (EMBOSS Menu is Not UNIX)
Application details and documentation for EMNU
EMNU is available as release 1.05 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file EMNU-1.05.tar.gz
ESIM4 (EMBOSS version of SIM4)
Application details and documentation for ESIM4
ESIM4 is available as release 1.0.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file ESIM4-1.0.0.tar.gz
HMMERNEW (EMBOSS version of HMMER 2.3.2)
Application details and documentation for HMMERNEW
HMMER 2.3.2 is available from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.3.2.tar.gz
IPRSCAN (InterProScan)
Application details and documentation for IPRSCAN
IPRSCAN is available as release 4.3.1 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file IPRSCAN-4.3.1.tar.gz
MEMENEW (EMBOSS version of MEME 4.0.0)
Application details and documentation for MEMENEW which wraps release 4.0.0 of the Meme package
MEMENEW is available as release 4.0.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEMENEW-4.0.0.tar.gz
MIRA
Application details and documentation for MIRA
MIRA is available as release 2.8.2 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file MIRA-2.8.2.tar.gz
MSE (A Multiple Sequence Screen Editor for Biological Sequences.)
Application details and documentation for MSE
MSE is available as release 1.0.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file MSE-1.0.0.tar.gz
MYEMBOSS (For sites to build their own applications)
Application details and documentation for MYEMBOSS
MYEMBOSS provides a directory structure and makefile stubs for developing your own applications more easily than in versions before 6.1.0.
MYEMBOSS requires autoconf, automake and libtool to be installed. See the INSTALL file for more informations.
MYEMBOSS is available as release 6.1.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file MYEMBOSS-6.1.0.tar.gz
MYEMBOSSDEMO (For sites to build their own applications)
Application details and documentation for MYEMBOSS
MYEMBOSSDEMO provides a directory structure and makefile stubs for developing your own applications more easily than in versions before 6.1.0.
MYEMBOSSDEMO requires autoconf, automake and libtool to be installed. See the INSTALL file for more informations.
MYEMBOSSDEMO is available as release 6.1.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file MYEMBOSSDEMO-6.1.0.tar.gz
PHYLIPNEW (Phylogeny Inference Package)
Application details and documentation for PHYLIPNEW.
PHYLIP was suppoert from the first EMBOSS release as one of the earliest EMBASSY packages. From 3.0.0 we included a conversion of the most recent PHYLIP. In release 6.1.0 this is now fully updated to release 3.68 (PHYLIPNEW). Program names now begin with 'f' rather than 'e' and interfaces are more EMBOSS-like. Please pass on feedback to our bug reporting list emboss-bug@emboss.open-bio.org
PHYLIPNEW is available as release 3.68 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file PHYLIPNEW-3.68.tar.gz
TOPO (Transmembrane display)
Application details and documentation for TOPO
TOPO is available as release 1.0.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file TOPO-1.0.0.tar.gz
Vienna RNA
Application details and documentation for VIENNA
ViennaRNA is available as release 1.7.2 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file VIENNA-1.7.2.tar.gz
Vienna RNA 2.0
Application details and documentation for VIENNA2
ViennaRNA is available as release 2.0.0 from our FTP server ftp://emboss.open-bio.org/pub/EMBOSS/ in file VIENNA2-2.0.0.tar.gz