dbxstat |
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% dbxstat Dump statistics for dbx databases EMBOSS database name: edam EMBOSS database field [id]: ns Output file [edam.dbxstat]: |
Go to the output files for this example
Dump statistics for dbx databases Version: EMBOSS:6.4.0.0 Standard (Mandatory) qualifiers: [-dbname] string EMBOSS database name (Any string from 2 to 19 characters, matching regular expression /[A-z][A-z0-9_]+/) [-field] string [id] EMBOSS database field (Any string) -outfile outfile [*.dbxstat] Output file name Additional (Optional) qualifiers: (none) Advanced (Unprompted) qualifiers: -indexdir directory Index directory (optional) -minimum integer [1] Minimum occurrences (Integer 1 or more) -maximum integer [0] Maximum occurrences (0=no maximum) (Integer 0 or more) Associated qualifiers: "-indexdir" associated qualifiers -extension string Default file extension "-outfile" associated qualifiers -odirectory string Output directory General qualifiers: -auto boolean Turn off prompts -stdout boolean Write first file to standard output -filter boolean Read first file from standard input, write first file to standard output -options boolean Prompt for standard and additional values -debug boolean Write debug output to program.dbg -verbose boolean Report some/full command line options -help boolean Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose -warning boolean Report warnings -error boolean Report errors -fatal boolean Report fatal errors -die boolean Report dying program messages -version boolean Report version number and exit |
Qualifier | Type | Description | Allowed values | Default |
---|---|---|---|---|
Standard (Mandatory) qualifiers | ||||
[-dbname] (Parameter 1) |
string | EMBOSS database name | Any string from 2 to 19 characters, matching regular expression /[A-z][A-z0-9_]+/ | Required |
[-field] (Parameter 2) |
string | EMBOSS database field | Any string | id |
-outfile | outfile | Output file name | Output file | <*>.dbxstat |
Additional (Optional) qualifiers | ||||
(none) | ||||
Advanced (Unprompted) qualifiers | ||||
-indexdir | directory | Index directory (optional) | Directory | |
-minimum | integer | Minimum occurrences | Integer 1 or more | 1 |
-maximum | integer | Maximum occurrences (0=no maximum) | Integer 0 or more | 0 |
Associated qualifiers | ||||
"-indexdir" associated directory qualifiers | ||||
-extension | string | Default file extension | Any string | |
"-outfile" associated outfile qualifiers | ||||
-odirectory | string | Output directory | Any string | |
General qualifiers | ||||
-auto | boolean | Turn off prompts | Boolean value Yes/No | N |
-stdout | boolean | Write first file to standard output | Boolean value Yes/No | N |
-filter | boolean | Read first file from standard input, write first file to standard output | Boolean value Yes/No | N |
-options | boolean | Prompt for standard and additional values | Boolean value Yes/No | N |
-debug | boolean | Write debug output to program.dbg | Boolean value Yes/No | N |
-verbose | boolean | Report some/full command line options | Boolean value Yes/No | Y |
-help | boolean | Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose | Boolean value Yes/No | N |
-warning | boolean | Report warnings | Boolean value Yes/No | Y |
-error | boolean | Report errors | Boolean value Yes/No | Y |
-fatal | boolean | Report fatal errors | Boolean value Yes/No | Y |
-die | boolean | Report dying program messages | Boolean value Yes/No | Y |
-version | boolean | Report version number and exit | Boolean value Yes/No | N |
565 operation 827 data 420 format 601 identifier 82 entity 57 resource 274 topic Total keywords: 7 IDs: 2826 |
Program name | Description |
---|---|
dbiblast | Index a BLAST database |
dbifasta | Index a fasta file database |
dbiflat | Index a flat file database |
dbigcg | Index a GCG formatted database |
dbxcompress | Compress an uncompressed dbx index |
dbxedam | Index the EDAM ontology using b+tree indices |
dbxfasta | Index a fasta file database using b+tree indices |
dbxflat | Index a flat file database using b+tree indices |
dbxgcg | Index a GCG formatted database using b+tree indices |
dbxobo | Index an obo ontology using b+tree indices |
dbxreport | Validate index and report internals for dbx databases |
dbxresource | Index a data resource catalogue using b+tree indices |
dbxtax | Index NCBI taxonomy using b+tree indices |
dbxuncompress | Uncompress a compressed dbx index |
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