ajseq


Data type AjPSeqCvt

Sequence conversion data. Used to convert a sequence to binary.

Constructor(s)

NameDescription
ajSeqCvtNewCreates from a character string of valid bases.
ajSeqCvtNewTextCreates from a character string of valid bases.
ajSeqCvtNewZeroCreates from a character string of valid bases.
ajSeqCvtNewZeroSCreates from an array of strings of valid bases.
ajSeqCvtNewZeroSSCreates from an array of strings of valid bases.

Output

NameDescription
ajSeqCvtTraceReports on contents for debugging

Alias name(s)

Name
AjSSeqCvt
AjOSeqCvt

Attributes

NameTypeDescription
sizeajintNumber of characters in table, usually all possible characters.
lenajintNumber of characters defined
missingajintIndex of the missing character value
nrlabelsajintNumber of row labels
basesAjPStrThe bases which can be converted
rlabelsAjPStr*Row labels
clabelsAjPStr*Column labels
tablechar*Binary character value for each character in bases
nclabelsajintNumber of column labels
Paddingchar[4]Padding to alignment boundary