ajdas.c

Prototype

AjPDasServer ajDasServerNew (
      void
);

Type Name Read/Write Description

AjPDasServer RETURN DAS server object

Type	Name	Read/Write	Description
`AjPDasServer`		RETURN	DAS server object

From EMBOSS 6.4.0

Prototype

void ajDasServerDel (
      AjPDasServer* thys
);

Type Name Read/Write Description

AjPDasServer* thys Modify DASserver object

void RETURN

Type	Name	Read/Write	Description
`AjPDasServer*`	`thys`	Modify	DASserver object
`void`		RETURN

From EMBOSS 6.4.0

Function ajDasSegmentDel

Delete DAS segment objects returned by entry_points queries

Prototype

void ajDasSegmentDel (
      AjPDasSegment* Psegment
);

Type Name Read/Write Description

AjPDasSegment* Psegment Modify DAS segment object

void RETURN

Type	Name	Read/Write	Description
`AjPDasSegment*`	`Psegment`	Modify	DAS segment object
`void`		RETURN

From EMBOSS 6.4.0

Function ajDasParseRegistry

Parses XML list of DAS sources, either coming from dasregistry.org or from individual DAS servers supporting DAS 'sources' command

Prototype

AjBool ajDasParseRegistry (
      AjPFilebuff buff,
      AjPList sources
);

Type Name Read/Write Description

AjPFilebuff buff Modify XML input stream

AjPList sources Modify pointer to the data structure for storing parser results of DAS/XML 'source' objects

AjBool RETURN True on success

Type	Name	Read/Write	Description
`AjPFilebuff`	`buff`	Modify	XML input stream
`AjPList`	`sources`	Modify	pointer to the data structure for storing parser results of DAS/XML 'source' objects
`AjBool`		RETURN	True on success

From EMBOSS 6.4.0

Function ajDasParseEntrypoints

Parses XML list of DAS entry-points, either coming from dasregistry.org or from individual DAS servers supporting DAS 'entry_points' command

Prototype

AjBool ajDasParseEntrypoints (
      AjPFilebuff buff,
      AjPList segments
);

Type Name Read/Write Description

AjPFilebuff buff Modify XML input stream

AjPList segments Modify pointer to the data structure for storing parser results of DAS/XML 'segment' objects

AjBool RETURN True on success

Type	Name	Read/Write	Description
`AjPFilebuff`	`buff`	Modify	XML input stream
`AjPList`	`segments`	Modify	pointer to the data structure for storing parser results of DAS/XML 'segment' objects
`AjBool`		RETURN	True on success

From EMBOSS 6.4.0

Function ajDasServerSethostS

Set the DAS server host name

Prototype

AjBool ajDasServerSethostS (
      AjPDasServer server,
      const AjPStr host
);

Type Name Read/Write Description

AjPDasServer server Modify DASserver object

const AjPStr host Input DAS server host name

AjBool RETURN True on success

Type	Name	Read/Write	Description
`AjPDasServer`	`server`	Modify	DASserver object
`const AjPStr`	`host`	Input	DAS server host name
`AjBool`		RETURN	True on success

From EMBOSS 6.4.0

Function ajDasServerSetpathS

Set the DAS server URL path

Prototype

AjBool ajDasServerSetpathS (
      AjPDasServer server,
      const AjPStr path
);

Type Name Read/Write Description

AjPDasServer server Modify DASserver object

const AjPStr path Input DAS server URL path

AjBool RETURN True on success

Type	Name	Read/Write	Description
`AjPDasServer`	`server`	Modify	DASserver object
`const AjPStr`	`path`	Input	DAS server URL path
`AjBool`		RETURN	True on success

From EMBOSS 6.4.0

Function ajDasServerSetport

Set the DAS server port

Prototype

AjBool ajDasServerSetport (
      AjPDasServer server,
      ajuint port
);

Type Name Read/Write Description

AjPDasServer server Modify DASserver object

ajuint port Input DAS server port

AjBool RETURN True on success

Type	Name	Read/Write	Description
`AjPDasServer`	`server`	Modify	DASserver object
`ajuint`	`port`	Input	DAS server port
`AjBool`		RETURN	True on success

From EMBOSS 6.4.0

Function ajDasServerGetSources

Makes an http request for getting either list of all DAS sources or a particular DAS source on a given DAS server. Http response is parsed and results are stored in server object's 'sources' attribute

Prototype

void ajDasServerGetSources (
      AjPDasServer server,
      const AjPStr cmd
);

Type Name Read/Write Description

AjPDasServer server Modify DAS server object

const AjPStr cmd Input DAS 'sources' command, queries either all DAS sources or a particular DAS source

void RETURN

Type	Name	Read/Write	Description
`AjPDasServer`	`server`	Modify	DAS server object
`const AjPStr`	`cmd`	Input	DAS 'sources' command, queries either all DAS sources or a particular DAS source
`void`		RETURN

From EMBOSS 6.4.0

Function ajDasGetSequenceQueryURI

Given a DAS server URL, returns sequence query URI for the DAS source specified in user query.

Prototype

AjPStr ajDasGetSequenceQueryURI (
      const AjPQuery qry,
      const AjPStr sourceURIorTitle
);

Type Name Read/Write Description

const AjPQuery qry Input sequence query object

const AjPStr sourceURIorTitle Input DAS source URI or title specified in current query

AjPStr RETURN sequence-query URI, null if not found

Type	Name	Read/Write	Description
`const AjPQuery`	`qry`	Input	sequence query object
`const AjPStr`	`sourceURIorTitle`	Input	DAS source URI or title specified in current query
`AjPStr`		RETURN	sequence-query URI, null if not found

From EMBOSS 6.4.0

Function ajDasSourceGetDBname

Returns an EMBOSS DB name for a given DAS source

Prototype

AjPStr ajDasSourceGetDBname (
      const AjPDasSource source,
      AjBool titleAndURI
);

Type Name Read/Write Description

const AjPDasSource source Input DAS source object

AjBool titleAndURI Input Include URI in name

AjPStr RETURN DB name

Type	Name	Read/Write	Description
`const AjPDasSource`	`source`	Input	DAS source object
`AjBool`	`titleAndURI`	Input	Include URI in name
`AjPStr`		RETURN	DB name

From EMBOSS 6.4.0

Function ajDasPrintCachefile

Prints DB definition for the specified DAS server object

Prototype

void ajDasPrintCachefile (
      const AjPDasServer server,
      AjPFile cachef
);

Type Name Read/Write Description

const AjPDasServer server Input DAS server object

AjPFile cachef Output server cachefile with DB definitions

void RETURN

Type	Name	Read/Write	Description
`const AjPDasServer`	`server`	Input	DAS server object
`AjPFile`	`cachef`	Output	server cachefile with DB definitions
`void`		RETURN

From EMBOSS 6.4.0

Function ajDasTestrangeParse

Parses a DAS test_range attribute and returns sequence identifier, and 'begin' and 'end' positions if any.

Prototype

AjPStr ajDasTestrangeParse (
      const AjPStr testrange,
      AjPStr* id,
      ajint* ibegin,
      ajint* iend
);

Type Name Read/Write Description

const AjPStr testrange Input DAS test_range string

AjPStr* id Output sequence identifier

ajint* ibegin Output sequence begin position

ajint* iend Output sequence end position

AjPStr RETURN returns the example query in EMBOSS USA syntax

Type	Name	Read/Write	Description
`const AjPStr`	`testrange`	Input	DAS test_range string
`AjPStr*`	`id`	Output	sequence identifier
`ajint*`	`ibegin`	Output	sequence begin position
`ajint*`	`iend`	Output	sequence end position
`AjPStr`		RETURN	returns the example query in EMBOSS USA syntax

From EMBOSS 6.4.0

ajdas.c

Function ajDasServerNew

Prototype

Function ajDasServerDel

Prototype

Function ajDasSegmentDel

Prototype

Function ajDasParseRegistry

Prototype

Function ajDasParseEntrypoints

Prototype

Function ajDasServerSethostS

Prototype

Function ajDasServerSetpathS

Prototype

Function ajDasServerSetport

Prototype

Function ajDasServerGetSources

Prototype

Function ajDasGetSequenceQueryURI

Prototype

Function ajDasSourceGetDBname

Prototype

Function ajDasPrintCachefile

Prototype

Function ajDasTestrangeParse

Prototype