[EMBOSS] Question about showalign program
maoj at helix.nih.gov
Wed Oct 28 14:39:40 EDT 2009
A user of ours have a question regarding showaling. When running
showalign with the input file (attached), the consensus (and parental)
residue is Lysine (K) and one of her mutants residue is Glutamic acid
(E). Lysine is basic and Glutamic acid is basic, which are opposites and
shouldn't be similar. She was using all default setting which supposed
to show (E) in the alignment output. But instead, it shows (e) which
indicate similarity between Lysine and Glutamic acid. Can someone help?
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