[EMBOSS] Trim polyA from fastq files
pmr at ebi.ac.uk
Thu Oct 1 08:09:48 EDT 2009
On 01/10/09 12:33, michael watson (IAH-C) wrote:
> I have some Illumina reads which have varying lengths of polyAs at the ends. I want to trim these off. The data is in fastq format.
> Is this possible in EMBOSS? I have 6.0.1 and I tried trimest but it couldn't read my fastq file
Yes, but you need EMBOSS 6.1.0 to support FASTQ input.
There are also a couple of patches that are needed for some FASTQ files.
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