[EMBOSS] Prettyplot options

Tim Carver tjc at sanger.ac.uk
Mon Sep 22 08:53:52 EDT 2008

You could try the Jemboss alignment editor.

This does create a single page and you can run it from the command line:



On 22/9/08 12:53, "Peter Rice" <pmr at ebi.ac.uk> wrote:

> simon andrews (BI) wrote:
>> I've been trying to make a nice image of an alignment using prettyplot,
>> but have failed to find the right set of options to get what I want.
>> I need to get the whole alignment into one image (png), even if that
>> ends up being very long and thin.  At the moment it always seems to
>> paginate.
> An interesting challenge. I will take a look.
> We were limited by the graphics library when we first rewrote prettyplot
> for EMBOSS but we now have more reliable PNG options in plplot.
> Pretyplot scales the plot to fit the page, so you need extra options to
> make the page larger ... and I will make sure all titles and labels can
> be hidden.
> regards,
> Peter
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