[EMBOSS] A question about CON entries
pmr at ebi.ac.uk
Fri Feb 1 11:55:37 EST 2008
Guy Bottu wrote:
> Dear friends,
> As you know, the databanks EMBL, GenBank and RefSeq contain entries that
> do not contain the sequence itself, but instead "join" information about
> how to compose the sequence using ranges from other sequences. When the
> databank has been installed under EMBOSS the sequence is not available,
> since EMBOSS wil give a "Warning: Sequence has zero length". Do you
> think that EMBOSS should be able to handle such cases ? And in the
> meantime, do you know about tools that can, given as input the "CON"
> sequence and a databank with sequences, assemble on-the-fly the sequence ?
Yes we need to handle those entries. If you want to request this
feature, please tell us. More requests means higher priority :-)
When reading a CON entry we need a database to use to read the true
sequence and features.
If we are reading from a database we can add the information in the
How do we define a default to resolve EMBL CON entries?
Can we handle EMBL release and EMBL updates?
More information about the EMBOSS