[EMBOSS] Embossdata -reject option - Checked by AntiVir DEMO versio
Marc.Logghe at DEVGEN.com
Wed Apr 12 10:02:09 EDT 2006
Hi Guy !
> You can look in the file .../share/EMBOSS/acd/embossdata.acd :
> selection: reject [
> default: "3, 5, 6"
> minimum: "1"
> maximum: "6"
> values: "None, AAINDEX, CVS, CODONS, PRINTS, PROSITE, REBASE"
> delimiter: ","
> header: "Directories to ignore"
> information: "Select directories"
> help: "This specifies the names of the sub-directories of the
> EMBOSS data directory that should be ignored when
> displaying data
> button: "Y"
> So, by default CVS, PRINTS and PROSITE are rejected.
Yes, that makes sense now !
> This does not work, there is no way to reject the files in
> the base data directory. The best you can do is to add on the
> command line
> -reject=2,3,5,6,7 or -reject=
> AAINDEX,CVS,PRINTS,PROSITE,REBASE What you can do however is :
> ls $EMBOSS_DATA/CODONS
Yeah, that is of course the most obvious ;-) Thing is that I wanted to
do it in an emboss-only way so that it would be possible to run the
emboss command via a soaplab service. The latter should provide a means
to dynamically fetch a list of codon usage tables. More or less like
showdb is doing.
> Hope this helps,
Yes it did. Thanks !
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